View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19533_high_2 (Length: 447)
Name: NF19533_high_2
Description: NF19533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19533_high_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 447
Target Start/End: Original strand, 47292069 - 47292499
Alignment:
| Q |
17 |
acaaagcaggcaaatagcataggattagtaaatgcagggcaatatcttgaggagaaatatggaggaggactcttccctattctttatatatggggaattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292069 |
acaaagcaggcaaatagcataggattagtaaatgcagggcaatatcttgaggagaaatatggaggaggactcttccctattctttatatatggggaattg |
47292168 |
T |
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| Q |
117 |
ggttactggcggccggacaaagtagcactatcactggcacatatgctgggcaattcataatggggggtttcctaaaccttcgattaaagaaatggttgag |
216 |
Q |
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| T |
47292169 |
ggttactggcggccggacaaagtagcactatcactggcacatatgctgggcaattcataatggggggtttcctaaaccttcgattaaagaaatggttgag |
47292268 |
T |
|
| Q |
217 |
agcattgatcactcggagttgtgcaattgtgccaactataattgtagctattgtttataacaggtcagaagcctcattggatgttttgaatgaatggctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292269 |
agcattgatcactcggagttgtgcaattgtgccaactataattgtagctattgtttataacaggtcagaagcctcattggatgttttgaatgaatggctc |
47292368 |
T |
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| Q |
317 |
aatgtgcttcagtccatacaaattccctttgcattgattcccctcctcacattagtctccaaagagcgtatcatggggtcctttaaggttgggcctgttc |
416 |
Q |
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| T |
47292369 |
aatgtgcttcagtccatacaaattccctttgcattgattcccctcctcacattagtctccaaagagcgtatcatggggtcctttaaggttgggcctgttc |
47292468 |
T |
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| Q |
417 |
ttgaggtgagttgatcatgatgtctcttcat |
447 |
Q |
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| T |
47292469 |
ttgaggtgagttgatcatgatgtttcttcat |
47292499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 34 - 349
Target Start/End: Original strand, 10389274 - 10389589
Alignment:
| Q |
34 |
cataggattagtaaatgcagggcaatatcttgaggagaaatatggaggaggactcttccctattctttatatatggggaattgggttactggcggccgga |
133 |
Q |
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| T |
10389274 |
cataggattagtaaatgcaggacaatatcttgaagaaaaatatggtggagggttctttccaattctttatatttggggtattggtttattagcagctggt |
10389373 |
T |
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| Q |
134 |
caaagtagcactatcactggcacatatgctgggcaattcataatggggggtttcctaaaccttcgat-taaagaaatggttgagagcattgatcactcgg |
232 |
Q |
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| T |
10389374 |
caaagtagcacaattactggtacctatgctggtcaatttataactgagggatttttaaaa-ttgaatataaaaaaatggttaagggcattgatcactaga |
10389472 |
T |
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| Q |
233 |
agttgtgcaattgtgccaactataattgtagctattgtttataacaggtcagaagcctcattggatgttttgaatgaatggctcaatgtgcttcagtcca |
332 |
Q |
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| T |
10389473 |
agttgtgctattgttccaactatgattgtagcaattgtttttaatacttcagaaggttcattggatactttgaatgaatggcttaatgtgcttcaagcaa |
10389572 |
T |
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| Q |
333 |
tacaaattccctttgca |
349 |
Q |
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| T |
10389573 |
tacaaattccttttgca |
10389589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 5803572 - 5803430
Alignment:
| Q |
44 |
gtaaatgcagggcaatatcttgaggagaaatatggaggaggactcttccctattctttatatatggggaattgggttactggcggccggacaaagtagca |
143 |
Q |
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| T |
5803572 |
gtaaatgcagggcagtaccttcaggagaagtatggaggcggagtattcccaatcctgtatatatggggtattgggttattagcagctggtcaaagtagca |
5803473 |
T |
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| Q |
144 |
ctatcactggcacatatgctgggcaattcataatggggggttt |
186 |
Q |
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| T |
5803472 |
ctattactggtacatatgctggacaattcatcatgggtggttt |
5803430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 5803326 - 5803258
Alignment:
| Q |
290 |
tcattggatgttttgaatgaatggctcaatgtgcttcagtccatacaaattccctttgcattgattccc |
358 |
Q |
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| T |
5803326 |
tcattagatgttttgaatgaatggcttaatgttcttcagtcagtgcaaatccctttcgcattgattccc |
5803258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 252
Target Start/End: Original strand, 39673961 - 39674167
Alignment:
| Q |
46 |
aaatgcagggcaatatcttgaggagaaatatggaggaggactcttccctattctttatatatggggaattgggttactggcggccggacaaagtagcact |
145 |
Q |
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||||||||| || |||||| |||||| ||||||||| ||| | || || || | ||||||||||| |||||||| | || || || |||||||||||| |
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| T |
39673961 |
aaatgcaggacagtatcttcaggagacatatggaggtggagtttttccgatattgtatatatggggtattgggttgttagcagctggtcaaagtagcact |
39674060 |
T |
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| Q |
146 |
atcactggcacatatgctgggcaattcataatggggggtttcctaaaccttcgattaaagaaatggttgagagcattgatcactcggagttgtgcaattg |
245 |
Q |
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| T |
39674061 |
ataactggtacttatgctggacaatttatcatgggaggctttctaaatttaaggttgaagaaatggatgagggcattgattactcgtagttttgcaatag |
39674160 |
T |
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| Q |
246 |
tgccaac |
252 |
Q |
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| T |
39674161 |
tcccaac |
39674167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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