View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19533_low_5 (Length: 334)

Name: NF19533_low_5
Description: NF19533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19533_low_5
NF19533_low_5
[»] chr2 (17 HSPs)
chr2 (13-312)||(9326321-9326618)
chr2 (13-311)||(9318466-9318754)
chr2 (150-290)||(9285291-9285433)
chr2 (16-244)||(9315028-9315273)
chr2 (149-244)||(9062307-9062404)
chr2 (19-244)||(9290918-9291159)
chr2 (150-201)||(9297516-9297567)
chr2 (16-89)||(9273182-9273257)
chr2 (155-201)||(9286205-9286251)
chr2 (151-196)||(7117142-7117187)
chr2 (165-226)||(9076768-9076831)
chr2 (21-80)||(9271844-9271905)
chr2 (16-90)||(8574446-8574522)
chr2 (105-142)||(9297589-9297626)
chr2 (165-226)||(9069171-9069234)
chr2 (240-290)||(9297435-9297485)
chr2 (101-137)||(9062248-9062284)
[»] scaffold0667 (1 HSPs)
scaffold0667 (16-259)||(1520-1755)
[»] chr3 (3 HSPs)
chr3 (16-140)||(37461471-37461599)
chr3 (229-301)||(37461262-37461334)
chr3 (180-274)||(37461367-37461462)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 9326618 - 9326321
Alignment:
Q  13 atactcaagttgtttcttctaatggaattagtctgcttggtttgtgaga--ggttgaattggtaatgaatggagctgcactcannnnnnnctcattttga 110  Q
    |||||||||||||||||| | ||||||||||||||||||||||||| ||  |||||||| | |||||||||||||||||||||       ||||||||||    
T  9326618 atactcaagttgtttcttgtgatggaattagtctgcttggtttgtgcgataggttgaatggataatgaatggagctgcactcatttttatctcattttga 9326519  T
Q  111 attgtatgtctgagatcacacttatccctcttatttggggtgtgaagaatttgatgatgaatcctctccccctctggcctttctaaaaggactgtgcttt 210  Q
    |||  ||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||| ||  ||||| |||||||||||||| || | ||||||    
T  9326518 att--atgtctgagatcacacttacccctcatgtttggggtgtgaagaatttgatgatgaatcatc--cccctttggcctttctaaaaaga-tctgcttt 9326424  T
Q  211 tatcttttacttctagtactgttgagaaaa-tatgtagtagtccatatttccctttattatatttgtacttgaaattctctacttgctacttctgcaatg 309  Q
    |||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||| ||    
T  9326423 tatcttttacttctagtactgttgagaaaaatatggaatagtccatatttgcctttatgatatttgtaattgaaactctctacttgctacttctgcattg 9326324  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 9318754 - 9318466
Alignment:
Q  13 atactcaagttgtttcttctaatggaattagtctgcttggtttgtgaga--ggttgaattggtaatgaatggagctgcactcannnnnnn--ctcatttt 108  Q
    |||||||||||||||||| | ||||||||||    ||||||||||| ||  || ||||||| |||||||||||||||||| ||         ||||||||    
T  9318754 atactcaagttgtttcttgtgatggaattagaaaccttggtttgtgggaaaggctgaattgataatgaatggagctgcacccatttttacatctcatttt 9318655  T
Q  109 gaattgtatgtctgagatcacacttatccctcttatttggggtgtgaagaatttgatgatgaatcctctccccctctggcctttctaaaaggactgt--g 206  Q
    |||||||||||||||||||||| ||||||||||| |||||                ||||| |||||||| ||||||| ||||||| ||||||  ||  |    
T  9318654 gaattgtatgtctgagatcacatttatccctcttgtttgg----------------tgatgcatcctctctccctctgacctttcttaaaggatcgtctg 9318571  T
Q  207 cttttatcttttacttctagtactgttgagaaaatatgtagtagtccatatttccctttattatatttgtacttgaaattctctacttgctacttctgca 306  Q
    |||||  || || |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  9318570 cttttgcctcttgcttctagtactgctgagaaaatatggaatagtccatatttccctttattatatttgtaattgaaactctctacttgctacttctgca 9318471  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 290
Target Start/End: Original strand, 9285291 - 9285433
Alignment:
Q  150 gtgtgaagaatttgatgatgaatcctctccccctctggcctttctaaaaggactgt--gcttttatcttttacttctagtactgttgagaaaatatgtag 247  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||| | |  |||||||| || |||||||||||||||||| |||||||| |     
T  9285291 gtgtgaagaatttgattatgaatcctctctccctctggcctttctaaaaggattatttgcttttatattctacttctagtactgttgaaaaaatatggaa 9285390  T
Q  248 tagtccatatttccctttattatatttgtacttgaaattctct 290  Q
    ||||||||||||||| |||| ||||||||| |||||| |||||    
T  9285391 tagtccatatttccccttatgatatttgtaattgaaactctct 9285433  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 9315273 - 9315028
Alignment:
Q  16 ctcaagttgtttcttctaatggaattagtctgcttggtttgtgaga--ggttgaattggtaatgaatggagctgcactca-nnnnnnnctcattttgaat 112  Q
    ||||| ||||||||| | ||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||        ||| | ||| ||    
T  9315273 ctcaacttgtttcttgtgatggaattagtctgcttggtttgtgggaatggttgaattgataatgaatggagctgcactcattttttctctcttcttggat 9315174  T
Q  113 tgtatgtctgagatcacacttatccctcttat--------------ttggggtgtgaagaatttgatgatgaatcctctccccctctggcctttctaaaa 198  Q
    |||||||||||||||||||||||||||||| |              || |||| |  ||||||||||||||||||||||| |||||||||||||||||||    
T  9315173 tgtatgtctgagatcacacttatccctcttttgtaaaaatatgacattagggtatttagaatttgatgatgaatcctctctccctctggcctttctaaaa 9315074  T
Q  199 ggactgtgct-tttatcttttacttctagtactgttgagaaaatatg 244  Q
    ||| | ||||  || ||||||| |||||| || ||||||||||||||    
T  9315073 gga-tctgctgcttgtcttttaattctagcaccgttgagaaaatatg 9315028  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 9062307 - 9062404
Alignment:
Q  149 ggtgtgaagaatttgatgatgaatcctctccccctctggcctttctaaaagga--ctgtgcttttatcttttacttctagtactgttgagaaaatatg 244  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||   | ||||||||| |||||||||||||||||||| ||| |||||    
T  9062307 ggtgtgaagaatttgatgatgaatcctctctccctctggcctatctaaaaggatcatttgcttttatattttacttctagtactgttgcgaatatatg 9062404  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 9291159 - 9290918
Alignment:
Q  19 aagttgtttcttctaatggaattagtctgcttggtttgtgag--aggttgaattggtaatgaatggagctgcactcannnnnnnctcattttgaattgta 116  Q
    ||||||||| || | |||||||||||   ||||||||||| |  ||||||||||| || |||| |||||||||  ||       ||| ||||||||||||    
T  9291159 aagttgtttgttgtgatggaattagttaccttggtttgtggggaaggttgaattgatattgaaaggagctgcatccatttttctctctttttgaattgta 9291060  T
Q  117 tgtctgagatcacacttatccctcttat--------------ttggggtgtgaagaatttgatgatgaatcctctccccctctggcctttctaaaaggac 202  Q
    |||||||||||||||||||||||||| |              || |||| || |||||||||||||||| |||||| ||||||| ||| ||||||||       
T  9291059 tgtctgagatcacacttatccctcttgtgtaaaaatctgacattagggtatgtagaatttgatgatgaaccctctctccctctgacctatctaaaagact 9290960  T
Q  203 tgtgcttttatcttttacttctagtactgttgagaaaatatg 244  Q
    | ||||||| |||||||||||||||||||||||| |||||||    
T  9290959 tctgcttttgtcttttacttctagtactgttgaggaaatatg 9290918  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 9297567 - 9297516
Alignment:
Q  150 gtgtgaagaatttgatgatgaatcctctccccctctggcctttctaaaagga 201  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  9297567 gtgtgaagaatttgatgaggaatcctctctccctctggcctttctaaaagga 9297516  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 9273257 - 9273182
Alignment:
Q  16 ctcaagttgtttcttctaatggaattagtctgcttggtttgtgag--aggttgaattggtaatgaatggagctgca 89  Q
    ||||||||| ||||| | ||||||||||||| ||||||||| |||  ||||||||||| |||||||||||||||||    
T  9273257 ctcaagttgcttcttgttatggaattagtctccttggtttgcgagaaaggttgaattgataatgaatggagctgca 9273182  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 9286251 - 9286205
Alignment:
Q  155 aagaatttgatgatgaatcctctccccctctggcctttctaaaagga 201  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  9286251 aagagtttgatgatgaatcctctctccctctggcctttctaaaagga 9286205  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 7117142 - 7117187
Alignment:
Q  151 tgtgaagaatttgatgatgaatcctctccccctctggcctttctaa 196  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  7117142 tgtgaagaatttgatgatgaatcctctctccctctggcctctctaa 7117187  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 9076768 - 9076831
Alignment:
Q  165 tgatgaatcctctccccctctggcctttctaaaagga--ctgtgcttttatcttttacttctag 226  Q
    |||||||||||||| ||||||||||||||||||||||   | ||| ||||||||||||||||||    
T  9076768 tgatgaatcctctctccctctggcctttctaaaaggatcttctgcctttatcttttacttctag 9076831  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 9271905 - 9271844
Alignment:
Q  21 gttgtttcttctaatggaattagtctgcttggtttgt--gagaggttgaattggtaatgaat 80  Q
    |||||||||| ||||||||||||||| ||||||||||  || ||||||||||| ||||||||    
T  9271905 gttgtttcttgtaatggaattagtctccttggtttgtgggaaaggttgaattgataatgaat 9271844  T

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Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 8574446 - 8574522
Alignment:
Q  16 ctcaagttgtttcttctaatggaattagtctgcttggtttgtg--agaggttgaattggtaatgaatggagctgcac 90  Q
    ||||||||||||||| | ||||||||||||  |||||||||||  | ||||||||||   |||||||||||||||||    
T  8574446 ctcaagttgtttcttgtgatggaattagtcaccttggtttgtggaaaaggttgaatttacaatgaatggagctgcac 8574522  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 9297626 - 9297589
Alignment:
Q  105 ttttgaattgtatgtctgagatcacacttatccctctt 142  Q
    |||||||||||||||||||||||||| |||||||||||    
T  9297626 ttttgaattgtatgtctgagatcacagttatccctctt 9297589  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 9069171 - 9069234
Alignment:
Q  165 tgatgaatcctctccccctctggcctttctaaaagga--ctgtgcttttatcttttacttctag 226  Q
    |||||||||||||| |||||||||||||||||| |||   | ||||||| ||||||||||||||    
T  9069171 tgatgaatcctctctccctctggcctttctaaatggatcttctgcttttgtcttttacttctag 9069234  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 9297485 - 9297435
Alignment:
Q  240 atatgtagtagtccatatttccctttattatatttgtacttgaaattctct 290  Q
    ||||||| |||||||||||| ||||||| ||||||||| |||||| |||||    
T  9297485 atatgtaatagtccatattttcctttatgatatttgtaattgaaactctct 9297435  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 9062248 - 9062284
Alignment:
Q  101 ctcattttgaattgtatgtctgagatcacacttatcc 137  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  9062248 ctcattttgagttgtaagtctgagatcacacttatcc 9062284  T

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Target: scaffold0667 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 1755 - 1520
Alignment:
Q  16 ctcaagttgtttcttctaatggaattagtctgcttggtttgtgagaggttgaattggtaatgaatggagctgcactcannnnnnnctcattttgaattgt 115  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||  |||||| | |||||||||||||||||||||           |||||||| ||    
T  1755 ctcaagttgtttcttgtaatggaattagtctgcttggtttgtaagattttgaatggataatgaatggagctgcactca-----------ttttgaatagt 1667  T
Q  116 atgtctgagatcacacttatccctcttatttggggtgtgaagaatttgatgatgaatcctctccccctctggcc-tttctaaaagga--ctgtgctttta 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||   | ||||||||    
T  1666 atgtctgagatcacacttatccctcttgtttggggtgtgaagaatttgatgatgaatcctctctctctctggccttttcgaaaaggatcgtctgctttta 1567  T
Q  213 tcttttacttctagtactgttgagaaaatatgtagtagtccatattt 259  Q
    || |||||||||| |||| |||| |||||||| | ||||||||||||    
T  1566 tcctttacttctaatactattgaaaaaatatggaatagtccatattt 1520  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 37461599 - 37461471
Alignment:
Q  16 ctcaagttgtttcttctaatggaattagtctgcttggtttgtgag--aggttgaattggtaatgaatggagctgcactca--nnnnnnnctcattttgaa 111  Q
    ||||||||||||||| | ||||||||||||| ||||||||||| |  ||||||||||| |||||||||||||||||| ||         |||||||||||    
T  37461599 ctcaagttgtttcttgtgatggaattagtctccttggtttgtgggtaaggttgaattgataatgaatggagctgcacgcatttgtatttctcattttgaa 37461500  T
Q  112 ttgtatgtctgagatcacacttatccctc 140  Q
    |||||||||||| || |||||||||||||    
T  37461499 ttgtatgtctgatattacacttatccctc 37461471  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 37461334 - 37461262
Alignment:
Q  229 ctgttgagaaaatatgtagtagtccatatttccctttattatatttgtacttgaaattctctacttgctactt 301  Q
    ||||| |||||||||| | ||||||||| |||||||||| ||||||||| |||||| ||||||||||||||||    
T  37461334 ctgttaagaaaatatggaatagtccatagttccctttatgatatttgtaattgaaactctctacttgctactt 37461262  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 37461462 - 37461367
Alignment:
Q  180 ccctctggcctttctaaaagga--ctgtgcttttatcttttacttctagtactgttgagaaaatatgtagtagtccatatttccctttattatattt 274  Q
    |||||||||||||||||| |||   | ||||||||| ||||||| |||||| |||| |||||||||| | |||||||||| ||||||||| ||||||    
T  37461462 ccctctggcctttctaaacggatcttctgcttttat-ttttactcctagtagtgttaagaaaatatggaatagtccatatatccctttatgatattt 37461367  T

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