View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19533_low_6 (Length: 256)
Name: NF19533_low_6
Description: NF19533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19533_low_6 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 1831950 - 1831706
Alignment:
| Q |
12 |
gagcagagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831950 |
gagcagagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
1831851 |
T |
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| Q |
112 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattacta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831850 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattacta |
1831751 |
T |
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| Q |
212 |
cattgttgatatcacaaaagatataataattatgaataatgtaga |
256 |
Q |
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| T |
1831750 |
cattgttgatatcacaaaagatataataattatgaataatgtaga |
1831706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 1866393 - 1866149
Alignment:
| Q |
12 |
gagcagagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866393 |
gagcagagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
1866294 |
T |
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| Q |
112 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattacta |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866293 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattacta |
1866194 |
T |
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| Q |
212 |
cattgttgatatcacaaaagatataataattatgaataatgtaga |
256 |
Q |
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| T |
1866193 |
cattgttgatatcacaaaagatataataattatgaataatgtaga |
1866149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 2534317 - 2534169
Alignment:
| Q |
12 |
gagcagagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
111 |
Q |
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||||||| ||||| |||||||| |||||| ||||| ||||||||| |||| |||||||||||||||||||||| || |||| |||||||| ||||| |
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| T |
2534317 |
gagcagaaacaatgttgttttgttccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaa |
2534218 |
T |
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| Q |
112 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataattt |
160 |
Q |
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||||||| || |||| |||||||||||||| | || ||||||||||| |
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| T |
2534217 |
tcctcgaaatttcactgaactcaccgacacatttgcaccctaataattt |
2534169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 2543761 - 2543613
Alignment:
| Q |
12 |
gagcagagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
111 |
Q |
| |
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||||||| ||||| |||||||| |||||| ||||| ||||||||| |||| |||||||||||||||||||||| || |||| |||||||| ||||| |
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| T |
2543761 |
gagcagaaacaatgttgttttgttccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaa |
2543662 |
T |
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| Q |
112 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataattt |
160 |
Q |
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|||| || || |||| |||||||||||||| | || ||||||||||| |
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| T |
2543661 |
tccttgaaatttcactgaactcaccgacacatttgcaccctaataattt |
2543613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 2556836 - 2556730
Alignment:
| Q |
20 |
acaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgat |
119 |
Q |
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||||| || |||||||||||| |||||| | |||||||||||||| ||||||||| | || ||||| | | |||| |||||||| ||||||||||||| |
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| T |
2556836 |
acaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccggtaaatcctcgat |
2556737 |
T |
|
| Q |
120 |
atgtcac |
126 |
Q |
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||||||| |
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| T |
2556736 |
atgtcac |
2556730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 2566662 - 2566546
Alignment:
| Q |
20 |
acaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgat |
119 |
Q |
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||||| || |||||||||||| |||| ||| |||||||| ||||| ||||||||| | || ||||| | | |||| ||||||||| |||||||||||| |
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| T |
2566662 |
acaatgttattttgatccaatagaatattgaaacaaccaggggagctacaatttaaattaacagctatcttgctagcagaagttccaataaatcctcgat |
2566563 |
T |
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| Q |
120 |
atgtcacatcactcacc |
136 |
Q |
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|||||||| ||||||| |
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| T |
2566562 |
atgtcacagaactcacc |
2566546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 2551148 - 2551104
Alignment:
| Q |
98 |
gaagttccagtaaatcctcgatatgtcacatcactcaccgacaca |
142 |
Q |
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| T |
2551148 |
gaagttccggtaaatcctcgatatgtcacatctctcaccgacaca |
2551104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 2546780 - 2546748
Alignment:
| Q |
113 |
cctcgatatgtcacatcactcaccgacacatct |
145 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
2546780 |
cctcgatatgttacatcactcaccgacacatct |
2546748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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