View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19534_high_2 (Length: 587)
Name: NF19534_high_2
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19534_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 36150707 - 36150179
Alignment:
| Q |
1 |
aatgtgtgttgttgcttggtggtgttgtggaggaagaggggagaaagggttggcttttatagtttagggagatggaaattaatgattggttaattaggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36150707 |
aatgtgtgttgttgcttggtggtgttgtggaggaagaggggagaaagggttggcttttatagtttagggagatggaaattaatgattggttaattaggtg |
36150608 |
T |
|
| Q |
101 |
caatgttttatcagaaaggtatcttatttgcatatcatgaacatgaaggtggtgcatcatcatagtgtaagatttgtgagtgattaggaagtgttagaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36150607 |
caatgttttatcagaaaggtatcttatttgcatatcatgaacatgaaggtggtgcatcatcatagtgtaagatttgtgaatgattaggaagtgttagaag |
36150508 |
T |
|
| Q |
201 |
ctgtaaagtagtatatgaaaatgtactaaatgcatgcaatgcaactatttgatttcacatcattgttacaacttacaatcagttggatgtacttttattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36150507 |
ctgtaaagtagtatatgaaaatgtactaaatgcatgcaatgcaactatttgatttcacatcattgttacaacttacaatcagttggatgtacttttattt |
36150408 |
T |
|
| Q |
301 |
taatgatactaatatggttggaaaggggacgattcgtttgcatataggtttagtatttccatcaaacttggaggatgatataactcaatataatttagat |
400 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36150407 |
taatgatactaatatggttggaatggggacgattcgtttgcatataggtttagtatttccatc-aacttggaggatgatataactcaatacaatttagat |
36150309 |
T |
|
| Q |
401 |
ccatatgttgcattgcaattgtctgaaacagataggaaaggatggagggcctaataccag----atagagattcttagattgatgtactaatacctccac |
496 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36150308 |
ccatatgttgcattgcaattgtctgaaacggataggaaaggatggagggcctaataccagatatatagagattcttagattgatgtactaatacctccac |
36150209 |
T |
|
| Q |
497 |
ggttgatagctaccaaaacagtaatagtga |
526 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
36150208 |
cattgatagctaccaaaacagtaatagtga |
36150179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 36154086 - 36153978
Alignment:
| Q |
12 |
ttgcttggtggtgttgtggaggaagaggggagaaagggttggcttttatagtttagggagatggaaattaatgattggttaattaggtgcaatgttttat |
111 |
Q |
| |
|
||||||| || || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
36154086 |
ttgcttgatgttgctgtggaggaagaggggagaaagggttggcttttatagtttagggggatggaaattattgattggttaattaggtgcaatgttttgt |
36153987 |
T |
|
| Q |
112 |
cagaaaggt |
120 |
Q |
| |
|
||||||||| |
|
|
| T |
36153986 |
cagaaaggt |
36153978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University