View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19534_high_4 (Length: 413)

Name: NF19534_high_4
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19534_high_4
NF19534_high_4
[»] chr6 (2 HSPs)
chr6 (16-397)||(2921191-2921572)
chr6 (25-272)||(1033872-1034119)
[»] chr5 (1 HSPs)
chr5 (28-282)||(36988592-36988846)
[»] chr1 (4 HSPs)
chr1 (16-275)||(4641020-4641279)
chr1 (22-123)||(32774365-32774466)
chr1 (229-272)||(28060731-28060774)
chr1 (239-279)||(32774575-32774615)
[»] chr2 (3 HSPs)
chr2 (29-272)||(1479715-1479958)
chr2 (20-108)||(13017113-13017202)
chr2 (56-104)||(11272272-11272320)
[»] chr8 (4 HSPs)
chr8 (20-273)||(9935969-9936221)
chr8 (212-273)||(8273410-8273471)
chr8 (182-272)||(37270264-37270354)
chr8 (212-272)||(42940813-42940873)
[»] chr4 (2 HSPs)
chr4 (21-153)||(2281934-2282066)
chr4 (229-273)||(1611238-1611282)
[»] chr7 (1 HSPs)
chr7 (20-273)||(42460361-42460613)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 2921191 - 2921572
Alignment:
Q  16 atgagcaaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2921191 atgagcaaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgg 2921290  T
Q  116 gtagatgtttccggccgccttccacacaaaacacaaagaggagactcatccggagccaagatatggcgaatggcgagattaactctagtggggattcgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2921291 gtagatgtttccggccgccttccacacaaaacacaaagaggagactcatccggagccaagatatggcgaatggcgagattaactctagtggggattcgat 2921390  T
Q  216 caagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaattagagagaataaaccccctcctttaaagccccaacaccctct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2921391 caagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaattagagagaataaaccccctcctttaaagccccaacaccctct 2921490  T
Q  316 tccacaaggaaaatggcttccaaaatgttatacgcggattttacggaaaaaattccatcatccacaaccgaccacacccact 397  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2921491 tccacaaggaaaatggcttccaaaatgttatacccggattttacggaaaaaattccatcatccacaaccgaccacacccact 2921572  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 272
Target Start/End: Complemental strand, 1034119 - 1033872
Alignment:
Q  25 caagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgggtagatgtt 124  Q
    ||||||||| |||||||||||||||| ||| ||| |||| ||||| | |||||| |||||| |||| ||||||||||| || || || |||||||||||     
T  1034119 caagttatgtggagtaataaagttaaccccaagctaatttaaaattccacgccaaattaaggaggagacatcacaatgcaaaaagagatgggtagatgtc 1034020  T
Q  125 tccggccgccttccacacaaaacacaaagaggagactcatccggagccaag-atatggcgaatggcgagattaactctagtggggattcgatcaagaagt 223  Q
    |||  |  ||| || ||||| ||||||||   |||| ||||| | | |||| ||||| |||| ||| |||||| | ||   ||| || |||||||| ||     
T  1034019 tccaccttcctcccgcacaagacacaaagcatagacacatccag-gtcaagaatatgacgaagggctagattatccctccagggaatacgatcaaggagc 1033921  T
Q  224 aaagaccaagagaaggccactactttagacggagccggactcttccaaa 272  Q
    || ||||||||||| ||||| ||||| || |||||||||||||||||||    
T  1033920 aaggaccaagagaacgccacaactttggaaggagccggactcttccaaa 1033872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 28 - 282
Target Start/End: Complemental strand, 36988846 - 36988592
Alignment:
Q  28 gttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgggtagatgtttcc 127  Q
    |||||| ||||| ||||| |||||| | | |||||||||||| || ||||| || ||  |||||| |||||||||||| ||||  || |||||||| |||    
T  36988846 gttatgtggagtgataaaattaatctccaaccaattcaaaatccggcgccaaatcaaagaggaaatatcacaatgtaaaaataaatgtgtagatgtctcc 36988747  T
Q  128 ggccgccttccacacaaaacacaaagaggagactcatccggagccaagatatggcgaatggcgagattaactctagtggggattcgatcaagaagtaaag 227  Q
    ||| |||||||||||| ||||||||| |||||| |||||| ||  ||||| |||||||| ||||||||| || | || |||||||||||||| ||||| |    
T  36988746 ggctgccttccacacataacacaaaggggagacacatccgaaggtaagatgtggcgaatagcgagattatcttttgtagggattcgatcaaggagtaagg 36988647  T
Q  228 accaagagaaggccactactttagacggagccggactcttccaaattagagagaa 282  Q
    |||| ||||| ||||| ||||| || |||||||||||||||||||||| ||||||    
T  36988646 accacgagaacgccaccactttcgatggagccggactcttccaaattaaagagaa 36988592  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 4641020 - 4641279
Alignment:
Q  16 atgagcaaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgg 115  Q
    |||| |||| || |||||||||||||| ||||||  | | ||||||||||| ||   ||| || |||||  |||||||||||||||||| |||||||||     
T  4641020 atgaacaaataaattatgaggagtaatgaagttagactcaagccaattcaagatttcacgtcaaattaaagaggaaacatcacaatgtaggaataggtgt 4641119  T
Q  116 gtagatgtttccggccgccttccacacaaaacacaaagaggagactcatccggagccaagatatggcgaatggcgagattaactctagtggggattcgat 215  Q
    | ||| || ||||||| ||| ||||||| |||||||||| | ||| |||||||| | |||||||||||||  || |||||  |||| || || || ||||    
T  4641120 gaagaagtctccggccacctcccacacataacacaaagaagggacgcatccggatctaagatatggcgaagcgcaagattgtctctcgtcggaatacgat 4641219  T
Q  216 caagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaatta 275  Q
    |||| ||||| ||| | ||||| |||||||| || || ||| ||||||||||||||||||    
T  4641220 caaggagtaaggacaatgagaacgccactacctttgatggacccggactcttccaaatta 4641279  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 32774365 - 32774466
Alignment:
Q  22 aaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgggtagat 121  Q
    |||||||||||| ||||||| ||| |||||| | ||||||||||| || | |||||| |||||  |||| ||||||||||||||||| || || ||||||    
T  32774365 aaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaacgaggatacatcacaatgtaagaaaagatgagtagat 32774464  T
Q  122 gt 123  Q
    ||    
T  32774465 gt 32774466  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 272
Target Start/End: Original strand, 28060731 - 28060774
Alignment:
Q  229 ccaagagaaggccactactttagacggagccggactcttccaaa 272  Q
    |||||||||||||||  |||| ||||||||||||||||||||||    
T  28060731 ccaagagaaggccaccgcttttgacggagccggactcttccaaa 28060774  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 32774575 - 32774615
Alignment:
Q  239 gccactactttagacggagccggactcttccaaattagaga 279  Q
    ||||||||||| ||||||||||||||| |||||| ||||||    
T  32774575 gccactactttggacggagccggactcatccaaagtagaga 32774615  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 1479715 - 1479958
Alignment:
Q  29 ttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgggtagatgtttccg 128  Q
    ||||||||||||||||| |||||||| |||||||| |||||| |  |||| |||||  |||| |||||||||||||||||||| || |||||||| ||      
T  1479715 ttatgaggagtaataaaattaatcccaagccaatttaaaataaggtgccaaattaaagaggagacatcacaatgtaagaatagatgagtagatgtctcaa 1479814  T
Q  129 gccgccttccacacaaaacacaaagaggagactcatccggagccaagatatggcgaatggcgagattaactctagtggggattcgatcaagaagtaaaga 228  Q
        ||| |||||||||||||||||    ||  || ||||  | | ||||||||||||||| ||| |    || || || || |||||||| | |||  |    
T  1479815 cttccctcccacacaaaacacaaagtaaggatgcacccgggtcaaggatatggcgaatggctagacttttcctcgtaggaatgcgatcaagtaataacaa 1479914  T
Q  229 ccaagagaaggccactactttagacggagccggactcttccaaa 272  Q
    ||||||||||||||||||||| || ||||||| |||||||||||    
T  1479915 ccaagagaaggccactactttggaaggagccgaactcttccaaa 1479958  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 13017113 - 13017202
Alignment:
Q  20 gcaaacaagttatgaggagtaataaagttaatcccta-gccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaa 108  Q
    |||||||||||||| ||||| || || |||||| | | ||||||||||||| | |||||| |||||  |||||||||||||||| |||||    
T  13017113 gcaaacaagttatgtggagttatgaaattaatctcaaagccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 13017202  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 11272320 - 11272272
Alignment:
Q  56 agccaattcaaaatacgacgccagattaagaaggaaacatcacaatgta 104  Q
    ||||||||||| |||| |||||| |||||  ||||||||||||||||||    
T  11272320 agccaattcaagatacaacgccaaattaaagaggaaacatcacaatgta 11272272  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 9936221 - 9935969
Alignment:
Q  20 gcaaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgggtag 119  Q
    |||||||| |||||||| |||||||| || ||||| |||||||| ||||||| |||||| |||||  |||| ||||||||||| ||||| || |||||||    
T  9936221 gcaaacaaattatgaggggtaataaaattcatcccgagccaatttaaaataccacgccaaattaaagaggagacatcacaatgcaagaagagatgggtag 9936122  T
Q  120 atgtttccggccgccttccacacaaaacacaaagaggagactcatccggagccaagatatggcgaatggcgagattaactctagtggggattcgatcaag 219  Q
    | || ||    | |||||||||| ||||||||||    ||| || ||| | ||||| |||| |||   || |||||| |  | || || || ||||||||    
T  9936121 aagtctcaacacaccttccacac-aaacacaaagtaaggacacacccgaatccaaggtatgtcgagatgcaagattatccttcgtaggaatacgatcaag 9936023  T
Q  220 aagtaaagaccaagagaaggccactactttagacggagccggactcttccaaat 273  Q
    |||||  |||||| |||| |  |||||||| || ||||||||||||||||||||    
T  9936022 aagtagggaccaatagaatgtgactactttggaaggagccggactcttccaaat 9935969  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 8273471 - 8273410
Alignment:
Q  212 cgatcaagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaat 273  Q
    |||||||| |||||||||||| |||| ||||| ||||| ||||||||||| |||||||||||    
T  8273471 cgatcaaggagtaaagaccaaaagaatgccaccactttggacggagccgggctcttccaaat 8273410  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 37270264 - 37270354
Alignment:
Q  182 cgaatggcgagattaactctagtggggattcgatcaagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaa 272  Q
    ||||| || |||||| |||| || || || |||||||||||||||| ||| ||||| ||||| ||||| || |||||||||||| ||||||    
T  37270264 cgaattgcaagattagctctcgtcggtatccgatcaagaagtaaagtccatgagaatgccaccactttggatggagccggactcctccaaa 37270354  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 42940873 - 42940813
Alignment:
Q  212 cgatcaagaagtaaagaccaagagaaggccactactttagacggagccggactcttccaaa 272  Q
    |||||||||||||||| ||| ||||| ||||| ||||| || |||| ||||||| ||||||    
T  42940873 cgatcaagaagtaaagtccatgagaatgccaccactttggatggagtcggactcctccaaa 42940813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 2282066 - 2281934
Alignment:
Q  21 caaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgggtaga 120  Q
    ||||||| ||||||||||| ||||| || || || |||||||| ||||| |||||||| |||    |||| |||||||||||||| || ||||| ||||     
T  2282066 caaacaaattatgaggagtgataaaattgattccgagccaatttaaaatccgacgccaaatttgtgaggagacatcacaatgtaaaaagaggtgagtagg 2281967  T
Q  121 tgtttccggccgccttccacacaaaacacaaag 153  Q
     || || |  | ||||||||||||| |||||||    
T  2281966 cgtctcggcactccttccacacaaagcacaaag 2281934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 1611282 - 1611238
Alignment:
Q  229 ccaagagaaggccactactttagacggagccggactcttccaaat 273  Q
    ||||||||||||||| ||||| ||||| |||||||| ||||||||    
T  1611282 ccaagagaaggccaccactttggacggtgccggacttttccaaat 1611238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 42460361 - 42460613
Alignment:
Q  20 gcaaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaacatcacaatgtaagaataggtgggtag 119  Q
    |||||||| |||||||| |||||||| || || || |||||||| ||| ||| |||||| |||||  |||| | ||||||||| || || ||||||||||    
T  42460361 gcaaacaaattatgaggggtaataaaattcattccgagccaatttaaa-taccacgccaaattaaagaggagaaatcacaatgcaaaaagaggtgggtag 42460459  T
Q  120 atgtttccggccgccttccacacaaaacacaaagaggagactcatccggagccaagatatggcgaatggcgagattaactctagtggggattcgatcaag 219  Q
    | || ||    | | |||||||||||||||||||    ||| ||  || | |||| || || ||||  ||||||||| |  | || || || | ||||||    
T  42460460 aagtctcaacacacattccacacaaaacacaaagtaaggacgcactcgaatccaaaatgtgacgaaatgcgagattatccttcgtaggaatgcaatcaag 42460559  T
Q  220 aagtaaagaccaagagaaggccactactttagacggagccggactcttccaaat 273  Q
     ||||  | ||||||||| | ||||||||| || ||||||||||||||||||||    
T  42460560 gagtagtgcccaagagaacgtcactactttggaaggagccggactcttccaaat 42460613  T

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