View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19534_high_6 (Length: 367)
Name: NF19534_high_6
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19534_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 39 - 277
Target Start/End: Original strand, 11996939 - 11997174
Alignment:
| Q |
39 |
gaaggagaggcacgttcatcttccaaaaaattaaaacttcttcatatccaatatgcaattacttattttgcttgcaatgcattccgaaaaattaaaatta |
138 |
Q |
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| T |
11996939 |
gaaggagaggcacgttcatcttccaaaaaattaaaacttc---ataaccaatatgcaattacttattttgcttacaatgcattccaaaaaattaaaatta |
11997035 |
T |
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| Q |
139 |
gatttttcgggagaagactatcgactatagagcatattaaagtcatgtttacttaaaatgtatgaaaacttacttaagtactagaaaatgcatactaaac |
238 |
Q |
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| T |
11997036 |
gatttttcgggagaagactatcgactatagagcatattaaactcatgtttacttaaaatgtatgaaaacttacttaagtactagaaaatgcatactaaac |
11997135 |
T |
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| Q |
239 |
agcaagaaaatacttcaaatcttaatataaaaattacat |
277 |
Q |
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| T |
11997136 |
agcaagaaaatacttcaaatcttaatataaaaattacat |
11997174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 161 - 350
Target Start/End: Complemental strand, 12259917 - 12259727
Alignment:
| Q |
161 |
gactatagagcatattaaagtcatgtttacttaaaatgtatgaaaacttacttaagtactagaaaatgcatactaaacagcaagaaaatacttcaaatct |
260 |
Q |
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| T |
12259917 |
gactatagagcagattaaactcatgtttacttaaaatgtatgaaaacttacttaagtattagaaaatgcatactaaacagcaagaaaatacttcaaatct |
12259818 |
T |
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| Q |
261 |
taatataaaaattacat-nnnnnnnctaaagagtcttagctataatttgttccatcctactctcaagccctttcagatgatcctcgagaac |
350 |
Q |
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| T |
12259817 |
taatatagaaattacataaaaaaaactaaacagtcttggctataatttgttccatcctactctcaagcccctttagataatcctcaagaac |
12259727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 11998504 - 11998558
Alignment:
| Q |
296 |
tagctataatttgttccatcctactctcaagccctttcagatgatcctcgagaac |
350 |
Q |
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| T |
11998504 |
tagctataatttgttccatcctactctcaagccctttcagatgatcctcgagaac |
11998558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 12234079 - 12234136
Alignment:
| Q |
293 |
tcttagctataatttgttccatcctactctcaagccctttcagatgatcctcgagaac |
350 |
Q |
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| T |
12234079 |
tcttagctataatgtgttccatgctactctcaagccctttcagatgatcctcaagaac |
12234136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 42195361 - 42195443
Alignment:
| Q |
32 |
aaaggaagaaggagaggcacgttcatcttccaaaaaattaaaacttcttcatatccaatatgcaattacttattttgcttgcaatg |
117 |
Q |
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| T |
42195361 |
aaaggaagaaggagaggcacgttcatcttccaaaaaattaaaa---cttcatatccaatatgcaattacttattttgcttacaatg |
42195443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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