View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19534_low_1 (Length: 847)
Name: NF19534_low_1
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19534_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 17 - 487
Target Start/End: Original strand, 42161966 - 42162436
Alignment:
| Q |
17 |
catagggttgtatttgatgaacgtgacgtggcacttcatggagagtttttaaaggaagtgaaggagttgttattaacggaggaagagttaggggttggtg |
116 |
Q |
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| T |
42161966 |
catagggttgtatttgatgaacgtgacgtggcacttcatggagagtttttaaaggaagtgaaggagttgttattaacggaggaagagttaggggttggtg |
42162065 |
T |
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| Q |
117 |
tggttttgccaagggtgtttgtgaagggtaggtatttgggtgggttggatgagttgatggagcttaatgaaacgggtcgacttgggaggatactgaatgc |
216 |
Q |
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| T |
42162066 |
tggttttgccaagggtgtttgtgaagggtaggtatttgggtgggttggatgagttgatggagcttaatgaaacgggtcgacttgggaggatactgaatgc |
42162165 |
T |
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| Q |
217 |
gacacgtgtggagagaggtgttggaagacaagggtgtgttggatgtggtggggttagatttgttccttgttgggattgtggtgggagttgtaagttggtt |
316 |
Q |
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| T |
42162166 |
gacacgtgtggagagaggtgttggaagacaagggtgtgttggatgtggtggggttagatttgttccttgttgggattgtggtgggagttgtaagttggtt |
42162265 |
T |
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| Q |
317 |
gctgctgatgctgggggtgagataaggtgccccaagtgtaatgagaatgggttagtccattgccctacttgtctttaatttcatgagtttcaatacttgt |
416 |
Q |
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| T |
42162266 |
acttctgatgctgggggtgagataaggtgccccaagtgtaatgagaatgggttagtccattgccctacttgtctttaatttcatgagtttcaatacttgt |
42162365 |
T |
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| Q |
417 |
ttcttgagttcttgttgttgtaatattattattattgattcatagtatactcatactattactgttttatt |
487 |
Q |
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| T |
42162366 |
ttcttgagttcttgttgttgtaatattattattattgattcatagtatactcatactattactgttttatt |
42162436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 487 - 616
Target Start/End: Original strand, 42162461 - 42162590
Alignment:
| Q |
487 |
ttctcaagtgtagtatatgtatatgttgagtacatgtttgtaatctcatcttgggaatatatttatagattatgtatggtacgactagagaatatgtgac |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42162461 |
ttctcaagtgtagtatatgtatatgttgagtacatgtttgtaatctcatctcgggaatatatttatagattatgtatggtacgactagagaatatgtgac |
42162560 |
T |
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| Q |
587 |
acctttaatgtattttctatatatctcacc |
616 |
Q |
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| T |
42162561 |
acctttaatgtattttctatacatctcacc |
42162590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 779 - 828
Target Start/End: Original strand, 42162791 - 42162840
Alignment:
| Q |
779 |
cttgaaatatggagcttagctcctcatcatcgagaattcgagatacatgg |
828 |
Q |
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||||| |||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
42162791 |
cttgagatatggaggttagctcctcatcatccagaattcgagatacatgg |
42162840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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