View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19534_low_11 (Length: 333)
Name: NF19534_low_11
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19534_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 34549137 - 34548836
Alignment:
| Q |
16 |
atgctttatttttatcctataaaaataaaaatgactactacta---tctttaaaacacgcaaatttaatgtacacaaatttttaaagctagaaaagcaac |
112 |
Q |
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| T |
34549137 |
atgctttatttttatcctataaaaataaaaatcactactactactatctttaaaacacgcaaatttaatgtacacaaatttttaaagctagaaa-gcaac |
34549039 |
T |
|
| Q |
113 |
aacaacattatgaaaagatgatggaacatggcaacacatggaaaatttatataaatgtctcacgtgacacatgttaccacttgaacattgtattttgttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549038 |
aacaacattatgaaaagatgatggaacatggcaaaacatggaaaatttatataaatgtctcacgtgacacatgttaccacttgaacattgtattttgttg |
34548939 |
T |
|
| Q |
213 |
atcaacaaatgcaccctctctcaaagtggacgagtatatatatgatgctacatatatattgtcataaaagtttagtttttggggtggcgacaacccctca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34548938 |
atcaacaaatgcaccctctctcaaagtggacgagtatatatatgatgctacatatatattgtcataaaagtttagtttttggggtggcgacaacccctca |
34548839 |
T |
|
| Q |
313 |
act |
315 |
Q |
| |
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||| |
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| T |
34548838 |
act |
34548836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 46469827 - 46469720
Alignment:
| Q |
21 |
ttatttttatcctataaaaataaaaatgactactactatctttaaaacacgcaaatttaatgtacacaaatttttaaagctagaaaagcaacaacaacat |
120 |
Q |
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|||||||||||||||||||| ||||| ||||| |||| ||| ||| | ||||||||||||||||| |||| ||| |||||| ||||||| ||||| |
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| T |
46469827 |
ttatttttatcctataaaaa---aaatg-ctactcctattttttaaagagccaaatttaatgtacacacttttt--aaggtagaaa-gcaacaataacat |
46469735 |
T |
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| Q |
121 |
tatgaaaagatgatg |
135 |
Q |
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||||||||||||||| |
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| T |
46469734 |
tatgaaaagatgatg |
46469720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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