View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19534_low_12 (Length: 304)
Name: NF19534_low_12
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19534_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 97 - 290
Target Start/End: Original strand, 10917283 - 10917476
Alignment:
| Q |
97 |
agaaaggcatgaaagtaaaacaaagataaaaggataaattgcataaaaggcttgtttaatttatttatgtgttcaagaattgtacaaatattgtatttat |
196 |
Q |
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| T |
10917283 |
agaaagacatgaaagtaaaacaaagataaaatgataaattgcataaaaggcttgtttaatttatttatgtgttcaagaattgtacaagtattgcatttat |
10917382 |
T |
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| Q |
197 |
aagcaaaacattgtggtctacaaaatttagcttgctcgactaattacgcgggtaccgcatggttcttcctgattgtttagagtatgcgacaccc |
290 |
Q |
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| T |
10917383 |
aagcaaaacattgtggtctacaaaatttagcttgcttgactaattacgcgggtaccgcatggttcttcttgattgttgagagtatgcgacaccc |
10917476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10916868 - 10916968
Alignment:
| Q |
1 |
caatacaccgtcttcatctcacttcaaaaaggtcccaagtggattgtaatttgattaccggtgttgaatcacagccgcataggactcacatttaagagaa |
100 |
Q |
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| T |
10916868 |
caatacatcgtcttcatctcacttcaaaaaggtcccaagtggattgtaatttgattaccggtgttgaatcacagccgcatagggcttacatttaagagaa |
10916967 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
10916968 |
a |
10916968 |
T |
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