View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19534_low_14 (Length: 247)

Name: NF19534_low_14
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19534_low_14
NF19534_low_14
[»] scaffold1999 (5 HSPs)
scaffold1999 (19-238)||(406-625)
scaffold1999 (155-240)||(190-275)
scaffold1999 (161-237)||(300-376)
scaffold1999 (171-212)||(371-412)
scaffold1999 (183-212)||(276-305)
[»] chr7 (4 HSPs)
chr7 (34-240)||(9913066-9913274)
chr7 (34-240)||(9926754-9926962)
chr7 (135-240)||(9908684-9908789)
chr7 (135-240)||(9918842-9918947)
[»] chr2 (2 HSPs)
chr2 (161-233)||(21208519-21208592)
chr2 (44-76)||(21208433-21208465)
[»] scaffold1149 (1 HSPs)
scaffold1149 (161-196)||(953-988)
[»] chr4 (1 HSPs)
chr4 (161-196)||(16235770-16235805)
[»] chr3 (2 HSPs)
chr3 (51-83)||(28555807-28555839)
chr3 (152-200)||(28735202-28735250)


Alignment Details
Target: scaffold1999 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: scaffold1999
Description:

Target: scaffold1999; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 625 - 406
Alignment:
Q  19 atacgtttataggggaaatatggccgatattatcaagtttgtttatgttataattatcgtactctttatatttttcagtggaaagaaaactgacggtaaa 118  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  625 atacgtttataggggaaatatggctgatattatcaaatttatttatgttataattatcgtactctttgtatttttcagtggaaagaacactgacggtaaa 526  T
Q  119 ccattttttatatcatttttcaaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  525 ccattttttatatcatttttcaaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaa 426  T
Q  219 agaatatatgcattgatgat 238  Q
    ||||||||||||||||||||    
T  425 agaatatatgcattgatgat 406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1999; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 155 - 240
Target Start/End: Complemental strand, 275 - 190
Alignment:
Q  155 cttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgcattgatgatgt 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  275 cttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgcattgatgatgt 190  T

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Target: scaffold1999; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 376 - 300
Alignment:
Q  161 acataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgcattgatga 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  376 acataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgcattgatga 300  T

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Target: scaffold1999; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 371 - 412
Alignment:
Q  171 ttatctcattttagtaacatacttttattcacattttcatca 212  Q
    |||| |||||||||||||||||||||||||||||| ||||||    
T  371 ttatgtcattttagtaacatacttttattcacattatcatca 412  T

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Target: scaffold1999; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 276 - 305
Alignment:
Q  183 agtaacatacttttattcacattttcatca 212  Q
    ||||||||||||||||||||||||||||||    
T  276 agtaacatacttttattcacattttcatca 305  T

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Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 34 - 240
Target Start/End: Complemental strand, 9913274 - 9913066
Alignment:
Q  34 aaatatggccgatattatcaagtttgtttatgttataattatcgtactctttatatttttcagtggaaagaaaactgacggtaaa-ccattttttat--a 130  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |  |    
T  9913274 aaatatggctgatattatcaagtttgtttatgttataattatcgtactctttatatttttcagtggaaagaacattgacggtaaaaccatttttttttta 9913175  T
Q  131 tcatttttcaaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgca 230  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9913174 tcatttt-caaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgca 9913076  T
Q  231 ttgatgatgt 240  Q
    ||||||||||    
T  9913075 ttgatgatgt 9913066  T

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Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 34 - 240
Target Start/End: Complemental strand, 9926962 - 9926754
Alignment:
Q  34 aaatatggccgatattatcaagtttgtttatgttataattatcgtactctttatatttttcagtggaaagaaaactgacggtaaa-ccattttttat--a 130  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |  |    
T  9926962 aaatatggctgatattatcaagtttgtttatgttataattatcgtactctttatatttttcagtggaaagaacattgacggtaaaaccatttttttttta 9926863  T
Q  131 tcatttttcaaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgca 230  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9926862 tcatttt-caaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgca 9926764  T
Q  231 ttgatgatgt 240  Q
    ||||||||||    
T  9926763 ttgatgatgt 9926754  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 9908789 - 9908684
Alignment:
Q  135 ttttcaaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgcattga 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9908789 ttttcaaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgcattga 9908690  T
Q  235 tgatgt 240  Q
    ||||||    
T  9908689 tgatgt 9908684  T

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Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 9918947 - 9918842
Alignment:
Q  135 ttttcaaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgcattga 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9918947 ttttcaaattatcttctttacttcgcacataatattttatctcattttagtaacatacttttattcacattttcatcacagcaaagaatatatgcattga 9918848  T
Q  235 tgatgt 240  Q
    ||||||    
T  9918847 tgatgt 9918842  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 21208519 - 21208592
Alignment:
Q  161 acataatattttatctcattttagtaacatacttttattcaca-ttttcatcacagcaaagaatatatgcattg 233  Q
    ||||||||||||||  ||||||| ||||||||||||||||| | ||||||| |||||||| | |||||| ||||    
T  21208519 acataatattttattacattttaataacatacttttattcatatttttcattacagcaaaaactatatgtattg 21208592  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 21208433 - 21208465
Alignment:
Q  44 gatattatcaagtttgtttatgttataattatc 76  Q
    |||||| ||||||||||||||||||||||||||    
T  21208433 gatattgtcaagtttgtttatgttataattatc 21208465  T

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Target: scaffold1149 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 988 - 953
Alignment:
Q  161 acataatattttatctcattttagtaacatactttt 196  Q
    ||||||||||||||||||||||||||||||| ||||    
T  988 acataatattttatctcattttagtaacatattttt 953  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 16235770 - 16235805
Alignment:
Q  161 acataatattttatctcattttagtaacatactttt 196  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16235770 acataatattttatctcattttagtaacatattttt 16235805  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 83
Target Start/End: Complemental strand, 28555839 - 28555807
Alignment:
Q  51 tcaagtttgtttatgttataattatcgtactct 83  Q
    ||||||||||||||||||| |||||||||||||    
T  28555839 tcaagtttgtttatgttatgattatcgtactct 28555807  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 28735202 - 28735250
Alignment:
Q  152 ttacttcgcacataatattttatctcattttagtaacatacttttattc 200  Q
    |||||||  |||||||||||||| ||||||| ||||||| |||||||||    
T  28735202 ttacttcctacataatattttatatcatttttgtaacattcttttattc 28735250  T

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