View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19534_low_15 (Length: 244)
Name: NF19534_low_15
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19534_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 7287516 - 7287278
Alignment:
| Q |
6 |
agaaagtatgtcaccaactttcaccatgttttccatcattaatatttgattatttgatttttaaaacaaatatgcacaagtctgtgcctaaataggggct |
105 |
Q |
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| T |
7287516 |
agaaagtatgtcaccaactttcaccatgttctccatcattaatatttgattatttgatttttaaaacaaatatgcacaagtctgtgcctaaataggggct |
7287417 |
T |
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| Q |
106 |
agaagcctagcataaattggactaaaatttaattttcaccccataaagagtaaattattgttgagggtcaaagtgttaaaaatattaagatataacaaca |
205 |
Q |
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| T |
7287416 |
agaagcctagcataaattggactaaaatttaattttcaccccataaagagtaaattattgttgagggtcaaagtgttaaaaatattaagatataacaaca |
7287317 |
T |
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| Q |
206 |
tattactgcatatgttctaaaaagtataactcaattcct |
244 |
Q |
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| T |
7287316 |
tattactgcatatgttctaaaaagtataactcaattcct |
7287278 |
T |
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