View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19534_low_3 (Length: 488)

Name: NF19534_low_3
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19534_low_3
NF19534_low_3
[»] chr1 (6 HSPs)
chr1 (135-468)||(14097470-14097803)
chr1 (1-45)||(14099921-14099965)
chr1 (367-466)||(22362527-22362626)
chr1 (342-436)||(33885943-33886033)
chr1 (342-436)||(33958219-33958309)
chr1 (373-449)||(41314512-41314588)
[»] chr4 (1 HSPs)
chr4 (245-338)||(11992312-11992406)
[»] chr8 (2 HSPs)
chr8 (342-466)||(7094381-7094501)
chr8 (342-466)||(7098114-7098234)
[»] chr3 (1 HSPs)
chr3 (342-466)||(8377300-8377420)
[»] chr7 (2 HSPs)
chr7 (271-340)||(2187611-2187683)
chr7 (338-449)||(2186892-2186999)
[»] chr5 (2 HSPs)
chr5 (373-449)||(37627647-37627723)
chr5 (373-449)||(37806770-37806846)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 135 - 468
Target Start/End: Complemental strand, 14097803 - 14097470
Alignment:
Q  135 taaaaatttactaacttagtttcaaattttgcctactcctaattcttactcaaggtttgggtgtgattaaggtataaattttacaactcctacccggtca 234  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14097803 taaaaatttaccaacttagtttcaaattttgcctacccctaattcttactcaaggtttgggtgtgattaaggtataaattttacaactcctatccggtca 14097704  T
Q  235 ttttgttttcaaaatagaacctttaaattagtaaataaatataagcatctggtataagtataattactacattataaacgaatgtaggaattaaatttta 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14097703 ttttgttttcaaaatagaacctttaaattagtaaataaatataagcacctggtataagtataattactacattataaacgaatgtaggaattaaatttta 14097604  T
Q  335 gaatcaaagtgtagaatcagtagagtggtgaatgaatgaatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactccct 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  14097603 gaatcaaagtgtagaatcagtagagtggtgaatgaatgaatagaataaatgaggtaaccgattgttattaatagtgagataaaccttcctctaactccct 14097504  T
Q  435 tcttagatgagtggctcgatacctaaggagtggg 468  Q
    ||||||||||||||||| ||||||||||||||||    
T  14097503 tcttagatgagtggctctatacctaaggagtggg 14097470  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14099965 - 14099921
Alignment:
Q  1 tatattataagcaaagttttaagaaacatagcaccaagacatgtc 45  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  14099965 tatattataagcaaagttttaagaaacatagcatcaagacatgtc 14099921  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 367 - 466
Target Start/End: Complemental strand, 22362626 - 22362527
Alignment:
Q  367 tgaatgaatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttcttagatgagtggctcgatacctaaggagtg 466  Q
    ||||||||| ||||| |  ||||||| |||||||||||||||||| |||| ||| || |||||||||||| || | ||||||| | || | |||||||||    
T  22362626 tgaatgaatggaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaaagagtggcactatgcttaaggagtg 22362527  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 436
Target Start/End: Complemental strand, 33886033 - 33885943
Alignment:
Q  342 agtgtagaatcagtagagtggtgaatgaatgaatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttc 436  Q
    ||||||||||||||| |||||||||||||||    ||||| |  ||||||| |||| |||||||| |||| |||| ||| || ||||||||||||    
T  33886033 agtgtagaatcagtaaagtggtgaatgaatg----gaataaagaaggtaaccgatttttattaatcgtgaaataaccctcccactaactcccttc 33885943  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 436
Target Start/End: Original strand, 33958219 - 33958309
Alignment:
Q  342 agtgtagaatcagtagagtggtgaatgaatgaatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttc 436  Q
    ||||||||||||||| |||||||||||||||    ||||| |  ||||||| |||| |||||||| |||| |||| ||| || ||||||||||||    
T  33958219 agtgtagaatcagtaaagtggtgaatgaatg----gaataaagaaggtaaccgatttttattaatcgtgaaataaccctcccactaactcccttc 33958309  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 41314512 - 41314588
Alignment:
Q  373 aatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttcttagatgagtggc 449  Q
    ||||||| ||| |||||||||||||||||||| | |||| ||||  || || ||||||| |||| ||||||||||||    
T  41314512 aatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttcctagatgagtggc 41314588  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 11992312 - 11992406
Alignment:
Q  245 aaaatagaacctttaaattagtaaataaatataagcatctggtataagtataattactacattataaacgaat-gtaggaattaaattttagaat 338  Q
    ||||||||||||||| |||||| || || ||||||||  || || ||||||| |||||||||||||||||||| |||||||||||||| ||||||    
T  11992312 aaaatagaacctttagattagtcaacaattataagcacatgttacaagtatagttactacattataaacgaatggtaggaattaaattctagaat 11992406  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 466
Target Start/End: Original strand, 7094381 - 7094501
Alignment:
Q  342 agtgtagaatcagtagagtggtgaatgaatgaatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttcttaga 441  Q
    ||||||||||||||| |||||||||||||||    ||||| |  ||||||| |||||||||||||||||| |||| ||| || |||||||||||| || |    
T  7094381 agtgtagaatcagtaaagtggtgaatgaatg----gaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaa 7094476  T
Q  442 tgagtggctcgatacctaaggagtg 466  Q
     ||||||| | || | |||||||||    
T  7094477 agagtggcactatgcttaaggagtg 7094501  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 466
Target Start/End: Original strand, 7098114 - 7098234
Alignment:
Q  342 agtgtagaatcagtagagtggtgaatgaatgaatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttcttaga 441  Q
    ||||||||||||||| |||||||||||||||    ||||| |  ||||||| |||||||||||||||||| |||| ||| || |||||||||||| || |    
T  7098114 agtgtagaatcagtaaagtggtgaatgaatg----gaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaa 7098209  T
Q  442 tgagtggctcgatacctaaggagtg 466  Q
     ||||||| | || | |||||||||    
T  7098210 agagtggcactatgcttaaggagtg 7098234  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 342 - 466
Target Start/End: Complemental strand, 8377420 - 8377300
Alignment:
Q  342 agtgtagaatcagtagagtggtgaatgaatgaatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttcttaga 441  Q
    ||||||||||||||| |||||||||||||||    ||||| |  ||||||| |||||||||||||||||| |||| ||| || |||||||||||| || |    
T  8377420 agtgtagaatcagtaaagtggtgaatgaatg----gaataaagaaggtaaccgattgttattaattgtgaaataaccctcccactaactcccttcctaaa 8377325  T
Q  442 tgagtggctcgatacctaaggagtg 466  Q
     ||||||| | || | |||||||||    
T  8377324 agagtggcactatgcttaaggagtg 8377300  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 2187683 - 2187611
Alignment:
Q  271 aaatataagcatctggtataagtataattactacat--tataaacgaatg-taggaattaaattttagaatca 340  Q
    ||||||||||| |||||| ||||||| |||||||||  |||||||||||| ||||||||||||| ||||||||    
T  2187683 aaatataagcacctggtacaagtatagttactacattatataaacgaatgctaggaattaaattctagaatca 2187611  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 2186999 - 2186892
Alignment:
Q  338 tcaaagtgtagaatcagtagagtggtgaatgaatgaatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttct 437  Q
    ||||||||||||||||| | |||||||| | |||    |||| ||| |||||||||||||||||||| | |||| ||||  || || ||||||| ||||     
T  2186999 tcaaagtgtagaatcagcaaagtggtgactaaat----agaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttcc 2186904  T
Q  438 tagatgagtggc 449  Q
    ||||||||||||    
T  2186903 tagatgagtggc 2186892  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 37627647 - 37627723
Alignment:
Q  373 aatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttcttagatgagtggc 449  Q
    ||||||| ||| |||||||||||||||||||| | |||| ||||  || || ||||||| |||| ||||||||||||    
T  37627647 aatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttcctagatgagtggc 37627723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 37806770 - 37806846
Alignment:
Q  373 aatagaatagatgaggtaactgattgttattaattgtgagataaaccttcctctaactcccttcttagatgagtggc 449  Q
    ||||||| ||| |||||||||||||||||||| | |||| ||||  || || ||||||| |||| ||||||||||||    
T  37806770 aatagaagagaagaggtaactgattgttattattagtgaaataactctcccactaactctcttcctagatgagtggc 37806846  T

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