View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19534_low_8 (Length: 356)
Name: NF19534_low_8
Description: NF19534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19534_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 41168564 - 41168234
Alignment:
| Q |
17 |
atttaccgctgttggttgctgggctcagtttttcatttatctaacctgacagtgccatgcattgtagctcatgaatttaaggaccttgttacggaaaata |
116 |
Q |
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| T |
41168564 |
atttaccgctgttggttgctgggctcagtttttcatttatctaacctgacagtgccatgcattgtagctcatgaatttaaggaccttgttacggaaaata |
41168465 |
T |
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| Q |
117 |
tacataaaggagttcaatctttctttagaattgaagagtgaaattgtttggtgtagaggaaaggaagtaggaccacatatgaattcataggaaataaaag |
216 |
Q |
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| T |
41168464 |
tacataaaggagttcaatctttctttagaattgaagggtgaaattgtttggtgtggaggaaaggaagtaggaccacatatgaattcataggaaataaaag |
41168365 |
T |
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| Q |
217 |
ggagacaaagtttttcgctgcattttaaacgtgttcttatgtcataaaagagttagaattatctttgtttcttagggctccgtttggagtttgataaata |
316 |
Q |
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| T |
41168364 |
ggagacaaagtttttcgctgcattttaaacgtgttcttatgtcataaaagagttagaattatctttgtttcttaggactccgtttggagtttgataaata |
41168265 |
T |
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| Q |
317 |
gacaaatatgaaaatttattttaagaattat |
347 |
Q |
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| T |
41168264 |
tacaaatatgaaaatttattttaagaattat |
41168234 |
T |
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