View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19535_low_2 (Length: 579)
Name: NF19535_low_2
Description: NF19535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19535_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 11 - 565
Target Start/End: Original strand, 51239238 - 51239792
Alignment:
| Q |
11 |
caaaggaaaggaaagaagatcattgttgatggaacatgattcgattggacctagaaagatggtttgttggatgatattcattgagcagagagattgagct |
110 |
Q |
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| T |
51239238 |
caaaggaaaggaaagaagatcattgttgatggaacatgattcgattggacctggaaagatggtttgttggatgatattcattgtgcagagagattgagct |
51239337 |
T |
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| Q |
111 |
tttcgccttccaatgtggtctgctgcgagttcttctccatcgagggggtgtttctgcacgcgctctgacgcctaagtctgtgaggggttcaagagagagt |
210 |
Q |
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| T |
51239338 |
tttagccttccaatgtggtctgctgcgagttcttctaaattgaggggttgtttctgcacgcgctctgacgcctaagtctgtgaggggttcaagagagagt |
51239437 |
T |
|
| Q |
211 |
gcggctatacataaggtaatatagaggataattaggggttttggttgtcaagcattcacatgaatagttgtccctgagggatagatgtgaccatttgggt |
310 |
Q |
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| T |
51239438 |
gcggctatacataaggtaatatagaggataattaggggttttggttgtcaagcattcacatgaatagttgtccctgagggatagatgtgaccatttgggt |
51239537 |
T |
|
| Q |
311 |
ggttctctagcattggatctgaactggacggactcgagcctagccagaatgggttttaggccggtccgaaacaaaacaccgattagaatctttcaagatt |
410 |
Q |
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| T |
51239538 |
ggttctctagcattggatctgaactggacggactcgagcctagccagaatgggttttaggccggtccgaaacaaaacaccgattagaatctttcaagatt |
51239637 |
T |
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| Q |
411 |
taatatccaatttttctttagtcgtagtgaaccttgatgaggatgcatcccaaactagtttaatggtaatttataccttgatgatgttcgcacaatagcg |
510 |
Q |
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| T |
51239638 |
taatatccaatttttctttagttgtagtgaaccttgatgaggatgcatcccaaactagtttaatggtaatttataccttgatgatgttcgcacaatagcg |
51239737 |
T |
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| Q |
511 |
taaagagtgtcaccatcaaatgacaaataagagggtctaaaaataccaatcttct |
565 |
Q |
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| T |
51239738 |
taaagagtgtcaccatcaaatgacaaataagagggtctaaaaataccaatcttct |
51239792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 6451314 - 6451398
Alignment:
| Q |
246 |
gggttttggttgtcaagcattcacatgaatagttgtccctgagggatagatgtgaccatttgggtggttctctagcattggatct |
330 |
Q |
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| T |
6451314 |
gggttttggttgtcaagccttcacatggacaattgcccctgatggacaagtgtgagcatttgggtggtcctcaagcattggatct |
6451398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 341
Target Start/End: Complemental strand, 14203567 - 14203504
Alignment:
| Q |
278 |
ttgtccctgagggatagatgtgaccatttgggtggttctctagcattggatctgaactggacgg |
341 |
Q |
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| T |
14203567 |
ttgtccctgagggacaggtgtgaccatctaggtggtcgtctaccataggatctgaactggacgg |
14203504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 22382101 - 22382009
Alignment:
| Q |
236 |
ggataattaggggttttggttgtcaagcattcacatgaatagttgtccctgagggatagatgtgaccatttgggtggttctctagcattggat |
328 |
Q |
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| T |
22382101 |
ggataagtaggatttttggttgttaaaccttcatctggatagttgtccctgagggacaggtgtgaccatctaagtggttttctagcattggat |
22382009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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