View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19535_low_3 (Length: 442)
Name: NF19535_low_3
Description: NF19535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19535_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 30824061 - 30823627
Alignment:
| Q |
1 |
atgctctcatcatatgacatttgtcgatctctccannnnnnncttcaaattaaaatatgttgacccttcttg------------------atatagcact |
82 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
30824061 |
atgctctcatcatatgacatttgtcgatctctccatttttttcttcaaattaaagtatgttgacccttcttgcattcttttttcaatctaatatagcact |
30823962 |
T |
|
| Q |
83 |
ttcctcaaataatactaatctaattacttcatatatttttaatgtcaagaagacacattcaatgccttaaaactaagaaaagaagaagacatattcaatt |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30823961 |
ttcctcaaataatactaatctaattacttcatatatttttaatgtcaagaagacacattcaatgccttaaaactaagaaaagaagaagacatattcaatt |
30823862 |
T |
|
| Q |
183 |
caataatacactttgctttatacgtgtatgtagtatatatgacttagtaaatcatttgattaattacaatagtttttcctaatcaactttcattttgcca |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30823861 |
caataatacactttgctttatacgtgtatgtagtatatatgacttagtaaatcatttgattaattacaatagttttttctaatcaactttcattttgcca |
30823762 |
T |
|
| Q |
283 |
tttaagttagtttatgtttaattagttcaacttatggttagttgaaattaactctagaagtgtatgtagcatttgagttgattgatggtgttaacttgag |
382 |
Q |
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| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30823761 |
tgtaagttggtttatgtttaattagttcaacttatggttagttgaaattaactctagaagtgtatgtagcatttgagttgagtgatggtgttaacttgag |
30823662 |
T |
|
| Q |
383 |
aatttaacatgtgattctctattaatttccgtaga |
417 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
30823661 |
aacttaacatgtgattctctattaatttccgtaga |
30823627 |
T |
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