View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19535_low_5 (Length: 241)

Name: NF19535_low_5
Description: NF19535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19535_low_5
NF19535_low_5
[»] scaffold0425 (2 HSPs)
scaffold0425 (38-224)||(4398-4576)
scaffold0425 (31-87)||(3826-3882)
[»] chr7 (3 HSPs)
chr7 (31-216)||(325520-325697)
chr7 (62-164)||(34853249-34853351)
chr7 (32-87)||(325329-325384)
[»] chr2 (2 HSPs)
chr2 (112-224)||(6852535-6852647)
chr2 (31-79)||(35214584-35214632)
[»] chr4 (2 HSPs)
chr4 (65-164)||(31911573-31911672)
chr4 (31-79)||(50656957-50657005)
[»] chr3 (1 HSPs)
chr3 (31-79)||(42423227-42423275)


Alignment Details
Target: scaffold0425 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 4576 - 4398
Alignment:
Q  38 tttcacataggacacttgataatcttcccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgttttttca 137  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  4576 tttcacataggacacttgataatcttcccaccatgagaaagtcactttttaccgccacctc--------acaggttttattaattttgtttgttttttca 4485  T
Q  138 aaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttgatcattcatc 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4484 aaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttgatcattcatc 4398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 3826 - 3882
Alignment:
Q  31 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagtcacttttt 87  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  3826 ggtggcatttcacatgggacacttgaaaatcttcccaccatgggaaagtcacatttt 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 325697 - 325520
Alignment:
Q  31 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgt 130  Q
    |||||||||| |||| ||||| |||| || ||||||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||||     
T  325697 ggtggcatttaacatgggacatttgaaaaccttcccaccatgggaaaatcactttttaccgccacctgtgag--------gttttattaattttgtttgg 325606  T
Q  131 tttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttgat 216  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  325605 tttttcaaaaggaaaaagaatgcaatatctaataatcgtaatatatttcttttgattaatatcatttccttcttctctcttttgat 325520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 34853351 - 34853249
Alignment:
Q  62 ttcccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatcta 161  Q
    |||||||||| |||||||  |||||||| ||||| ||| |||||||| ||||| | || ||||||||||||||||||||| |||||||||||| ||| ||    
T  34853351 ttcccaccataggaaagttgctttttactgccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaagaaaaaagaatgcagtattta 34853252  T
Q  162 ata 164  Q
    |||    
T  34853251 ata 34853249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 325329 - 325384
Alignment:
Q  32 gtggcatttcacataggacacttgataatcttcccaccatgggaaagtcacttttt 87  Q
    ||||||||| |||| |||||||||| |||||||||||||| | |||||||| ||||    
T  325329 gtggcatttaacatgggacacttgaaaatcttcccaccatagaaaagtcacatttt 325384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 6852647 - 6852535
Alignment:
Q  112 ttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt 211  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6852647 ttttattaattttgtttgttttttcaaaagggaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctctctt 6852548  T
Q  212 ttgatcattcatc 224  Q
    |||||||||||||    
T  6852547 ttgatcattcatc 6852535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 35214584 - 35214632
Alignment:
Q  31 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagt 79  Q
    |||| ||||| ||||  ||||||||| ||||||||||||||||||||||    
T  35214584 ggtgacatttaacatgagacacttgaaaatcttcccaccatgggaaagt 35214632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 31911573 - 31911672
Alignment:
Q  65 ccaccatgggaaagtcactttttaccgccacctgtgagtgaaacaggttttattaattttgtttgttttttcaaaaggaaaaagaatgcactatctaata 164  Q
    ||||||||| |||||  ||||||||  |||| ||| |||||||| ||||| | || |||||||||||||||||||||||||||||||||| ||| |||||    
T  31911573 ccaccatggaaaagttgctttttactaccacttgtaagtgaaaccggtttcactatttttgtttgttttttcaaaaggaaaaagaatgcagtatttaata 31911672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 50656957 - 50657005
Alignment:
Q  31 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagt 79  Q
    ||||| |||||||||  ||||||||| |||||||||||||||| |||||    
T  50656957 ggtggtatttcacatgagacacttgaaaatcttcccaccatggaaaagt 50657005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 42423275 - 42423227
Alignment:
Q  31 ggtggcatttcacataggacacttgataatcttcccaccatgggaaagt 79  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  42423275 ggtggcatttcacatgagacacttgaaaatcttcccaccatgggaaagt 42423227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University