View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_high_12 (Length: 428)
Name: NF19536_high_12
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 5 - 410
Target Start/End: Complemental strand, 19578564 - 19578161
Alignment:
| Q |
5 |
gagtgagatgaaattgaaataccacaaactgcaaccagtactacgcatattcaattgttatagactcagaaagattgtgaaaaaactgaactaaatttgc |
104 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19578564 |
gagtgatatgaaattgaaataccacaaactgcaaccagtgctacgcatattcaattgttatagactcagaaagattgtgaaaaaactgaactaaatttgc |
19578465 |
T |
|
| Q |
105 |
tccaatcaatatttataaaattacacagccatcgtatcgttttggcacaaattaaacagatatatatatacataaagttagcaaacaaattaaacaagca |
204 |
Q |
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| T |
19578464 |
tcgaatcaatatttataaaattacacagccattgtatcgttttgtcacaaattaaacagatatatata--cataaagttagcaaacaaattaaacaagca |
19578367 |
T |
|
| Q |
205 |
cacaaatagaaaacatatatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaataaggaacaaaccgctacaaattattc |
304 |
Q |
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| T |
19578366 |
cacaaatagaaaacatatatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaataaggaacaaaccgctacaaattattc |
19578267 |
T |
|
| Q |
305 |
caaccatcaaaggaaaactctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaaccctataatccgaaaaagcgatagccac |
404 |
Q |
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| T |
19578266 |
caaccatcaaaggaaaactctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaaccctataatccgaaaaagcgatagccac |
19578167 |
T |
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| Q |
405 |
aaacac |
410 |
Q |
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|||||| |
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| T |
19578166 |
aaacac |
19578161 |
T |
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Back To:
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Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 221 - 410
Target Start/End: Original strand, 2787244 - 2787433
Alignment:
| Q |
221 |
atatactaataaattaggaagacatgcatccaattccatgccttgaagtaggaaaaataaggaacaaaccgctacaaattattccaaccatcaaaggaaa |
320 |
Q |
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||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||| |
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| T |
2787244 |
atatactaaaaaattaggcagacatgcatccaattccacgccttgaagttggaaaaataagaaacaaaccgctacaaacaattccaaccatcaatggaaa |
2787343 |
T |
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| Q |
321 |
actctccataacttgatccatctctttttcatgtccaggaaataaacaattagtaaccctataatccgaaaaagcgatagccacaaacac |
410 |
Q |
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||||||||||||||||||||| || |||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||| |
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| T |
2787344 |
actctccataacttgatccatttccctttcatgtccaggaaacaaacaattactcaccctataatccgaaaaagcgatcgccacaaacac |
2787433 |
T |
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