View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_high_14 (Length: 414)
Name: NF19536_high_14
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 59 - 397
Target Start/End: Original strand, 44722917 - 44723255
Alignment:
| Q |
59 |
tttaagatccaaagtccaaacttctttcttccccactccccatcgccggcactgctcaccggtgattcatcacggcgacctctccacacacaatcttttt |
158 |
Q |
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| T |
44722917 |
tttaagatccaaagtccaaacttctttcttccccactccccatcgccggcactgctcaccggcgattcatcacggcgacctctccacacacaatcttttt |
44723016 |
T |
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| Q |
159 |
tctacctcccaacaaccagcataactcattgactcacattccaatcttctcatatctaaacttctctcttttccaatcaccatcgccggcaactttgacg |
258 |
Q |
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| T |
44723017 |
tctacctcccaacaaccaacataactcattgactcacattccaatcttctcagatctaaacttctctcttttccaatcaccatcgccggcaactttgacg |
44723116 |
T |
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| Q |
259 |
caatccatggcggcacgattcatcaaaatagagaacacgtgaaaactgaaactgtctacactcaaaagttcaacaaaactcattgatgtcatctgcttat |
358 |
Q |
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| T |
44723117 |
caatccatggcggcacgattcatcaaaatagagaacacgtgaaaactgaaactatctacactcaaaggttcaacaaaacccattgatgccatctgcttat |
44723216 |
T |
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| Q |
359 |
tgtgaagaactattgatataaaatttgattgtgtttttt |
397 |
Q |
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| T |
44723217 |
tgtgaagaactattgatataaaatttgattgtgtttttt |
44723255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 44722850 - 44722891
Alignment:
| Q |
10 |
aggagcacagacatctctccacactcttaacacatcccaacaa |
52 |
Q |
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| T |
44722850 |
aggaacacagacatctctccacactc-taacacatcccaacaa |
44722891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 14292191 - 14292156
Alignment:
| Q |
73 |
tccaaacttctttcttccccactccccatcgccggc |
108 |
Q |
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| T |
14292191 |
tccaaacttctttcttcctcactccccatcgccggc |
14292156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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