View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_high_15 (Length: 389)
Name: NF19536_high_15
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 15 - 373
Target Start/End: Complemental strand, 41028510 - 41028145
Alignment:
| Q |
15 |
gagcagtctaaaggtgttaaaattgcaaaattatcatctgttaaattaaaaatacaaaccttgttgtgtctgttgggagagttgaaagtttcagattcat |
114 |
Q |
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| T |
41028510 |
gagcagtctaaaggtgtcaaaattgcaaaattatcatctgttaaattaaaaatacaaaccttgttgtgtctgttgggagagttgaaagtttcagattcat |
41028411 |
T |
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| Q |
115 |
actcctgcctctgag------gacgatattgttcctgaagaaaaaagtgtaggacagtaaacatagttgcatacattacatccacaatacatttatttat |
208 |
Q |
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| T |
41028410 |
actcctgcctctgagtctgaggacgatattgttcctgaagaaaaaagtgtaggacagtaaacatagttgcatacattacatccacaatacatttatttat |
41028311 |
T |
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| Q |
209 |
ttataaaaatagacaa-caactcaccttatgaggccgaggactatgacggttactattgtcttgccatgtttctacttcctccttctgtaataatattaa |
307 |
Q |
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| T |
41028310 |
ttataaaaatagacaaacaattcaccttatgaggccgaggactatgacggttactattgtcttgccatgtttctacttcctccttctgtaataatattaa |
41028211 |
T |
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| Q |
308 |
gtaatcaatattatttgttttgattgaattgagaatgcgaatagaccttgtttggataaacaactt |
373 |
Q |
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| T |
41028210 |
gtaatcaatattatttgttttgaatgaattgagaatgcgaatagaccttgtttggataaacaactt |
41028145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 71 - 212
Target Start/End: Complemental strand, 41029138 - 41028999
Alignment:
| Q |
71 |
aaccttgttgtgtctgttgggagagttgaaagtttcagattcatactcctgcctctgaggacgatattgttcctgaagaaaaaagtgtaggacagtaaac |
170 |
Q |
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| T |
41029138 |
aaccttgttgggtctgttggaggtgttgaacgtttcagattcatactcctgctgctgaggacgatattgttcctgaag--aaaagtgtagtacaataaac |
41029041 |
T |
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| Q |
171 |
atagttgcatacattacatccacaatacatttatttatttat |
212 |
Q |
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| T |
41029040 |
atagttacatacattacatccacgataaatttatttaattat |
41028999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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