View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_high_16 (Length: 367)
Name: NF19536_high_16
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 7 - 367
Target Start/End: Original strand, 44420499 - 44420859
Alignment:
| Q |
7 |
aatatcttgcaggggaaccaatttctgtgctagacggagtacctgttgctataaaggacgaaatagattgtttaccatatccaacaacaggtagtgtaat |
106 |
Q |
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| T |
44420499 |
aatatcttgcaggggaaccaatttctgtgctagacggagtacctgttgctataaaggacgaaatagattgtttaccatatccaacaacaggtagtgtaat |
44420598 |
T |
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| Q |
107 |
gtgctgctgtattctcaggtgtcatctattcaaatagctaagcttttgatttcataattcactaaagcatcttaaaatggtgtcttaaaggaggtacaaa |
206 |
Q |
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| T |
44420599 |
gtgctgttgtattctcaggtgtcatctattcaaatagttaagctgttgatttcataattcactaaagcatcttaaaatggtgtcttaaaggaggtacaaa |
44420698 |
T |
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| Q |
207 |
gtggctccataaagaaaggccttgtaaagatgatgcttgctgtgttaagcgtttaaggcaatgtggcgccatacttgttgggaaatccaacatgcatgaa |
306 |
Q |
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| T |
44420699 |
gtggctccataaagaaaggccttgtaaagatgatgcttgctgtgttaagcgtttaaggcaatgtggcaccatacttgttgggaaatccaacatgcatgaa |
44420798 |
T |
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| Q |
307 |
cttggatctggaactagtgggataaatccacattatgggtaagagtacaacgtgttacgct |
367 |
Q |
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| T |
44420799 |
cttggatctggaactagtgggataaatccacattatgggtaagagtacaacgtgttacgct |
44420859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 199 - 350
Target Start/End: Original strand, 39559798 - 39559949
Alignment:
| Q |
199 |
ggtacaaagtggctccataaagaaaggccttgtaaagatgatgcttgctgtgttaagcgtttaaggcaatgtggcgccatacttgttgggaaatccaaca |
298 |
Q |
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| T |
39559798 |
ggtacaaagtggctgcacaaacaaaggccttgtacagatgatgcttgttgtattaagcgtttaagattatgcggtgctgtacttgttggaaagactaata |
39559897 |
T |
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| Q |
299 |
tgcatgaacttggatctggaactagtgggataaatccacattatgggtaaga |
350 |
Q |
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| T |
39559898 |
tgcatgaacttggagctggaactagcggtataaatccgcattatgggtaaga |
39559949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 39559612 - 39559693
Alignment:
| Q |
21 |
gaaccaatttctgtgctagacggagtacctgttgctataaaggacgaaatagattgtttaccatatccaacaacaggtagtg |
102 |
Q |
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| T |
39559612 |
gaacctatatctgtgctggatggagttcctgttgctatcaaggatgaaatagattgtttgccatatcctactacaggtagtg |
39559693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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