View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19536_high_4 (Length: 609)

Name: NF19536_high_4
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19536_high_4
NF19536_high_4
[»] chr3 (7 HSPs)
chr3 (138-373)||(49926183-49926418)
chr3 (392-594)||(49925995-49926197)
chr3 (20-144)||(49927646-49927773)
chr3 (380-414)||(49233942-49233976)
chr3 (145-184)||(49926463-49926502)
chr3 (522-572)||(5575261-5575311)
chr3 (380-414)||(49234514-49234548)
[»] chr2 (3 HSPs)
chr2 (298-594)||(27638737-27639040)
chr2 (380-414)||(24455822-24455856)
chr2 (510-572)||(6671832-6671894)
[»] chr6 (2 HSPs)
chr6 (298-428)||(26842157-26842291)
chr6 (510-572)||(31662616-31662678)
[»] chr1 (3 HSPs)
chr1 (526-594)||(32150087-32150155)
chr1 (380-414)||(50862501-50862535)
chr1 (298-427)||(32149938-32150066)
[»] chr5 (2 HSPs)
chr5 (527-594)||(6701072-6701139)
chr5 (365-417)||(6700986-6701038)
[»] chr8 (2 HSPs)
chr8 (510-572)||(42318438-42318500)
chr8 (380-410)||(43228058-43228088)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 138 - 373
Target Start/End: Complemental strand, 49926418 - 49926183
Alignment:
Q  138 aattgagtcatacttctctttatgcttctctccactgcaatttcataataaatataagtatattgttattctcttttcctatcagttaagtttttagtnn 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||      
T  49926418 aattgagtcatacttctctttatgcttctctccactgcaatttcataataaatataagtatattgttattctcttttcctatcagttaagtttgtagtaa 49926319  T
Q  238 nnnnntatgacacaattaaattgttcatcaccatatgcttatatgaaacaaataaaaatatatattgagctgcctataggagttcgaacattgactgaat 337  Q
         ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49926318 aaaaatatgaaacaattaaattgttcatcaccatatgcttatatgaaacaaataaaaatatatattgagctgcctataggagttcgaacattgactgaat 49926219  T
Q  338 caggtgtttttcttggtagttttttctgcataattt 373  Q
    ||||||||||||||||||||||||||||||||||||    
T  49926218 caggtgtttttcttggtagttttttctgcataattt 49926183  T

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Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 392 - 594
Target Start/End: Complemental strand, 49926197 - 49925995
Alignment:
Q  392 ttttctgcataatttggagcgagtttaaggaattttagtttggagtcagtttttagcctgtggacttctgttgtgcagaaaaagtgttttgatattgccg 491  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  49926197 ttttctgcataatttggagcgagtttaaggaatttgagtttggagtcagtttttagcctgtggacttctgttgtgcagaaaaagtgttttaatattgcca 49926098  T
Q  492 ctgcaatgtagcggcgtttctataagcgtgttctagaaagcatgatgtaaagtgaaagatacatgttttgttattttacttcacagatcatctgttttca 591  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  49926097 ctgcaatgtagcagcgtttctataagcgtgttctagaaagcatgatgtaaagtgaaagatacatattttgttattttacttcacagatcatctgttttca 49925998  T
Q  592 aag 594  Q
    |||    
T  49925997 aag 49925995  T

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Target: chr3; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 49927773 - 49927646
Alignment:
Q  20 gcataacacacgatacaatacggtttgtttcagagtgtggggggtatggtatgtgagtgtttttatcga---tattgtttatgttagatgatatatttca 116  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  49927773 gcatagcacacgatacaatacggtttgtttcagagtgtggggggtatggtatgtgagtgtttttatcgatattattgtttatgttagatgatatatttca 49927674  T
Q  117 ttttgaagatgatgtgatataaattgag 144  Q
    ||||||||||||||||||||||||||||    
T  49927673 ttttgaagatgatgtgatataaattgag 49927646  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 414
Target Start/End: Complemental strand, 49233976 - 49233942
Alignment:
Q  380 ggttcaaggtaattttctgcataatttggagcgag 414  Q
    |||||||||||||||||||||||||||||||||||    
T  49233976 ggttcaaggtaattttctgcataatttggagcgag 49233942  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 49926502 - 49926463
Alignment:
Q  145 tcatacttctctttatgcttctctccactgcaatttcata 184  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  49926502 tcatacttctctttatgtttctcttcactgcaatttcata 49926463  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 522 - 572
Target Start/End: Complemental strand, 5575311 - 5575261
Alignment:
Q  522 ttctagaaagcatgatgtaaagtgaaagatacatgttttgttattttactt 572  Q
    ||||||||||  ||||||| |||| |||| |||||||||||||||||||||    
T  5575311 ttctagaaagtttgatgtatagtgtaagaaacatgttttgttattttactt 5575261  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 414
Target Start/End: Complemental strand, 49234548 - 49234514
Alignment:
Q  380 ggttcaaggtaattttctgcataatttggagcgag 414  Q
    |||||||||||||||| ||||||||||||||||||    
T  49234548 ggttcaaggtaattttatgcataatttggagcgag 49234514  T

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Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 298 - 594
Target Start/End: Complemental strand, 27639040 - 27638737
Alignment:
Q  298 tatattgagctgcctataggagttcgaacattgactgaatcaggtgtttttcttggtagttttttctgcataatttagggcaggttcaaggtaattttct 397  Q
    |||||| | ||||||| | ||||| |||| || || || |||||||||||||||||| ||||||||||||||| || | || ||  ||||||||||| ||    
T  27639040 tatattcaactgcctacaagagtttgaacttttaccgattcaggtgtttttcttggttgttttttctgcataacttggagctggcccaaggtaatttact 27638941  T
Q  398 gcataatttggagcgagtttaaggaatttt-------agtttggagtcagtttttagcctgtggacttctgttgtgcagaaaaagtgttttgatattgcc 490  Q
    | |||||||||||||||| | | |  ||||       |||||| ||   ||||  ||| |||   || |||||||||| |||||||||||||||| | |     
T  27638940 gaataatttggagcgagtgtgaagcctttttttgcatagtttgtagcaggtttccagcttgtcagctgctgttgtgcaaaaaaagtgttttgatactaca 27638841  T
Q  491 gctgcaatgtagcggcgtttctataagcgtgttctagaaagcatgatgtaaagtgaaagatacatgttttgttattttacttcacagatcatctgttttc 590  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||| | ||||||||| |||||||||||||||||||||  ||||| ||||||||||    
T  27638840 gctgcaatgtagcggcgtttctataaaggtgttctagaaagcatgatgcatagtgaaagacacatgttttgttattttactttgcagataatctgttttc 27638741  T
Q  591 aaag 594  Q
    ||||    
T  27638740 aaag 27638737  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 24455822 - 24455856
Alignment:
Q  380 ggttcaaggtaattttctgcataatttggagcgag 414  Q
    |||||||||||||||||||||||||||||||||||    
T  24455822 ggttcaaggtaattttctgcataatttggagcgag 24455856  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 572
Target Start/End: Original strand, 6671832 - 6671894
Alignment:
Q  510 tctataagcgtgttctagaaagcatgatgtaaagtgaaagatacatgttttgttattttactt 572  Q
    ||||||||  ||||||||||||  ||||||| |||| |||| |||| ||||||||||||||||    
T  6671832 tctataaggttgttctagaaagtttgatgtatagtgtaagaaacatattttgttattttactt 6671894  T

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Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 298 - 428
Target Start/End: Original strand, 26842157 - 26842291
Alignment:
Q  298 tatattgagctgcctataggagttcgaacattgactgaatcaggtgtttttcttggtagttttttct----gcataatttagggcaggttcaaggtaatt 393  Q
    ||||||||| |||||||||||||| |||| || |||||||||||||||||||||||| ||||||| |    |||||| || | || ||| ||||||||||    
T  26842157 tatattgagttgcctataggagtttgaacttttactgaatcaggtgtttttcttggttgttttttttttttgcataacttggagctggtccaaggtaatt 26842256  T
Q  394 ttctgcataatttggagcgagtttaaggaatttta 428  Q
    |||||||||||||||||||||||| ||| ||||||    
T  26842257 ttctgcataatttggagcgagttttagggatttta 26842291  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 572
Target Start/End: Complemental strand, 31662678 - 31662616
Alignment:
Q  510 tctataagcgtgttctagaaagcatgatgtaaagtgaaagatacatgttttgttattttactt 572  Q
    |||| ||| |||||||||||||  ||||||| |||| |||| |||| ||||||||||||||||    
T  31662678 tctaaaagggtgttctagaaagtttgatgtatagtgtaagaaacatattttgttattttactt 31662616  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 594
Target Start/End: Original strand, 32150087 - 32150155
Alignment:
Q  526 agaaagcatgatgtaaagtgaaagatacatgttttgttattttacttcacagatcatctgttttcaaag 594  Q
    ||||||| ||||| | | ||||||| |||||||||||||||| ||||| ||||| || |||||||||||    
T  32150087 agaaagcttgatgcataatgaaagacacatgttttgttatttgacttcgcagattatatgttttcaaag 32150155  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 414
Target Start/End: Original strand, 50862501 - 50862535
Alignment:
Q  380 ggttcaaggtaattttctgcataatttggagcgag 414  Q
    ||||||||||| |||||||||||||||||||||||    
T  50862501 ggttcaaggtagttttctgcataatttggagcgag 50862535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 427
Target Start/End: Original strand, 32149938 - 32150066
Alignment:
Q  298 tatattgagctgcctataggagttcgaacattgactgaatcaggtgtttttcttggtagttttttctgcataatttagggcaggttcaaggtaattttct 397  Q
    |||||||||||  ||| |||||||   || || |||||||| | |||||||||| ||  || ||| |||||||||| | || ||||||| ||||| ||||    
T  32149938 tatattgagctttctacaggagtttccacttttactgaatctgatgtttttctttgtttttcttt-tgcataatttggagctggttcaatgtaatgttct 32150036  T
Q  398 gcataatttggagcgagtttaaggaatttt 427  Q
    ||||||||||||| ||| || ||| |||||    
T  32150037 gcataatttggagggagcttgagggatttt 32150066  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 594
Target Start/End: Original strand, 6701072 - 6701139
Alignment:
Q  527 gaaagcatgatgtaaagtgaaagatacatgttttgttattttacttcacagatcatctgttttcaaag 594  Q
    |||||| ||||| | ||||||||| ||||||||| |||||| ||||  |||||||| |||||||||||    
T  6701072 gaaagcttgatgaatagtgaaagacacatgtttttttatttgactttgcagatcatatgttttcaaag 6701139  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 6700986 - 6701038
Alignment:
Q  365 gcataatttagggcaggttcaaggtaattttctgcataatttggagcgagttt 417  Q
    ||||||||| | || ||||||| ||||||||||||||||||| ||| ||||||    
T  6700986 gcataatttggagctggttcaatgtaattttctgcataatttagagggagttt 6701038  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 572
Target Start/End: Original strand, 42318438 - 42318500
Alignment:
Q  510 tctataagcgtgttctagaaagcatgatgtaaagtgaaagatacatgttttgttattttactt 572  Q
    |||| ||| |||||||||||||  ||||||| |||| |||| |||| ||||||||||||||||    
T  42318438 tctaaaagggtgttctagaaagtttgatgtatagtgtaagaaacatattttgttattttactt 42318500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 410
Target Start/End: Original strand, 43228058 - 43228088
Alignment:
Q  380 ggttcaaggtaattttctgcataatttggag 410  Q
    |||||||||||||||||||||||||||||||    
T  43228058 ggttcaaggtaattttctgcataatttggag 43228088  T

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