View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_high_9 (Length: 436)
Name: NF19536_high_9
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 48402699 - 48402476
Alignment:
| Q |
19 |
agggcatttgggctttcccttattgttaaccttgtctctgtagcaaggacattcatgcttgttcccataagtcccagaaggaacacatttgcactcattg |
118 |
Q |
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| T |
48402699 |
agggcatttgggctttcccttattgttaaccttgtctctgtagcaaggacattcatgcttgtttccataagtcccagaaggaacacatttgcactcattg |
48402600 |
T |
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| Q |
119 |
cagcatatttcacagtacttcacacacctatcttgaacccctgctttagagcatctgtctgaacacttgctgctacaattggctgccattattaaaagtg |
218 |
Q |
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| T |
48402599 |
cagcatatttcacagtacttcacacacctatcttgaacccctgctttagagcatctgtctgaacacttgctgctacaattggctgccattattaaaagtg |
48402500 |
T |
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| Q |
219 |
gaaatgtaaatttagtacactcac |
242 |
Q |
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| T |
48402499 |
gaaatgtaaatttagtacactcac |
48402476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 48402437 - 48402308
Alignment:
| Q |
281 |
gaatcctctcatttcataatcttacatgaatcctcctcatatgcaatggctagctccaagaaagaggagcatagaagaagggaacataatagcaacatgg |
380 |
Q |
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| T |
48402437 |
gaatcctctcatttcataatcttacatgaatcctc---atatgcaatggctagctccaagaaagaggagcatagaagaagggaacagaatagcaacatgg |
48402341 |
T |
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| Q |
381 |
tgaagagaggcttcattttcgctttcttaatat |
413 |
Q |
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| T |
48402340 |
tgaagagaggcttcattttcgctttcttaatat |
48402308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 413
Target Start/End: Original strand, 6401964 - 6402032
Alignment:
| Q |
348 |
agcatagaagaagggaacataatagcaacatggtgaagaga---ggcttcattttcgctttcttaatat |
413 |
Q |
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| T |
6401964 |
agcatagaagaagggaacagaatagcaacatggtgaagagaggcggcttcattttggctttcttaatat |
6402032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 391
Target Start/End: Original strand, 31877609 - 31877652
Alignment:
| Q |
348 |
agcatagaagaagggaacataatagcaacatggtgaagagaggc |
391 |
Q |
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| T |
31877609 |
agcatagaagaagggaacagaatagcaacatggtgaagagaggc |
31877652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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