View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19536_low_10 (Length: 434)
Name: NF19536_low_10
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 197 - 410
Target Start/End: Original strand, 23026375 - 23026588
Alignment:
| Q |
197 |
gacaaaatataatgtaattaatgttaccttttaggtaaacaatgctgcaaaacctaccagtaagaaaataatagataatactgatgaagatataaacact |
296 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23026375 |
gacaaaatataatgtatataatgttaccttttaggtaaacaatgctgcaaaacctaccagtaagaaaataatagataatactgatgaagatataaacact |
23026474 |
T |
|
| Q |
297 |
acattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23026475 |
acattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagtgttcacttcttccg |
23026574 |
T |
|
| Q |
397 |
ttgcaggtttaaaa |
410 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23026575 |
ttgcaggtttaaaa |
23026588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 215 - 410
Target Start/End: Original strand, 23035197 - 23035392
Alignment:
| Q |
215 |
taatgttaccttttaggtaaacaatgctgcaaaacctaccagtaagaaaataatagataatactgatgaagatataaacactacattgggtacaaatttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23035197 |
taatgttaccttttaggtaaacaatgctgcaaaacctacaagtaagaaaataatagataatactgatgaagatataaacactacattgggtacaaatttt |
23035296 |
T |
|
| Q |
315 |
gtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgcaggtttaaaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23035297 |
gtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagtgttcacttcttccgttgcaggtttaaaa |
23035392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 23026179 - 23026309
Alignment:
| Q |
1 |
agtggagaagcaaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttca |
100 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23026179 |
agtggaaaaacaaagggtttaatgtaacaggatcagtatgtgatatactatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttca |
23026278 |
T |
|
| Q |
101 |
tggaaagctcaatattctagtacgatccatt |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23026279 |
aggaaagctcaatattctagtacgatccatt |
23026309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 23034987 - 23035117
Alignment:
| Q |
1 |
agtggagaagcaaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttca |
100 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
23034987 |
agtggaaaaacaaagggtttaatgtaacaggatcagtatgtgatatattatttcatgaacaacgcaaaagattaatggaaactgtttcttctatctttca |
23035086 |
T |
|
| Q |
101 |
tggaaagctcaatattctagtacgatccatt |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
23035087 |
tggaaagctcaatattctagtacgatccatt |
23035117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 227 - 410
Target Start/End: Original strand, 23057732 - 23057915
Alignment:
| Q |
227 |
ttaggtaaacaatgctgcaaaacctaccagtaagaaaataatagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttac |
326 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||||||| |||| |||||| |||||||||| |||||| ||||||||||||||| |||||||||| |
|
|
| T |
23057732 |
ttaggtaaacaatgctgccacatgtacacataagaaaatactagagtatactgctgaagatatagtaactacaatgggtacaaattttgagtctggttac |
23057831 |
T |
|
| Q |
327 |
catttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgcaggtttaaaa |
410 |
Q |
| |
|
||| | |||||||| ||| | || ||||||||||||||||| ||||||||||||||||||| ||||| |||| |||||||||| |
|
|
| T |
23057832 |
catctttgtcaactagcatacccacttctaaaagaatctggatatggaagcatagtgttcatatcttctgttggaggtttaaaa |
23057915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 23091940 - 23092048
Alignment:
| Q |
274 |
atactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatgg |
373 |
Q |
| |
|
||||||||||||||||| ||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
23091940 |
atactgatgaagatatagcatctacaattggtaccaattttgtgtctagttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatgg |
23092039 |
T |
|
| Q |
374 |
aagcatagt |
382 |
Q |
| |
|
||||||||| |
|
|
| T |
23092040 |
aagcatagt |
23092048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 379
Target Start/End: Original strand, 23081042 - 23081147
Alignment:
| Q |
274 |
atactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatgg |
373 |
Q |
| |
|
|||||||||||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
23081042 |
atactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatgg |
23081141 |
T |
|
| Q |
374 |
aagcat |
379 |
Q |
| |
|
|||||| |
|
|
| T |
23081142 |
aagcat |
23081147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 23069175 - 23069232
Alignment:
| Q |
322 |
gttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcat |
379 |
Q |
| |
|
||||||||||||||||||||||||| || ||| ||||||||||||| ||||| ||||| |
|
|
| T |
23069175 |
gttaccatttgtgtcaacttgcacacccacttttaaaagaatctggatatgggagcat |
23069232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 23091379 - 23091462
Alignment:
| Q |
39 |
tgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctcaatattctagta |
122 |
Q |
| |
|
|||||| ||||||||| ||||||||| | ||| | |||||||||||| |||| | |||||| ||||| ||||||||||||||| |
|
|
| T |
23091379 |
tgtgatttattatttcgtgaacaacgtgaaaaattgatggaaactgttgcttcaacctttcaaggaaaactcaatattctagta |
23091462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 23056655 - 23056710
Alignment:
| Q |
72 |
ctaatggaaactgtttcttctatctttcatggaaagctcaatattctagtacgatc |
127 |
Q |
| |
|
|||||||||| |||| |||| |||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
23056655 |
ctaatggaaaatgttgcttcaatctttcaaggaaaactcaatattctagtaagatc |
23056710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 23063829 - 23063912
Alignment:
| Q |
39 |
tgtgatatattatttcatgaacaacgcaagaaactaatggaaactgtttcttctatctttcatggaaagctcaatattctagta |
122 |
Q |
| |
|
|||||| ||||||||||||| ||||| | || | |||||||| ||| |||| |||||| ||||||| ||||||||||||||| |
|
|
| T |
23063829 |
tgtgatttattatttcatgaccaacgtcaaaagttgatggaaaccgttgcttcgatctttgatggaaaactcaatattctagta |
23063912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 404
Target Start/End: Original strand, 30790306 - 30790384
Alignment:
| Q |
326 |
ccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgcaggt |
404 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||||| |||| ||||| ||||||| ||| || ||||||||| |
|
|
| T |
30790306 |
ccatctgtgccaactttcacatcctcttctaaaagaatctggaaatggtagcattgtgttcatttcatctgttgcaggt |
30790384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 30706279 - 30706202
Alignment:
| Q |
324 |
taccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgca |
401 |
Q |
| |
|
|||||| | |||||||| ||| |||||||||| ||||||||||| |||||||||| ||||||| ||| || |||||| |
|
|
| T |
30706279 |
taccatctatgtcaactagcatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgca |
30706202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University