View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_low_11 (Length: 429)
Name: NF19536_low_11
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 9e-77; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 217 - 422
Target Start/End: Complemental strand, 2052962 - 2052759
Alignment:
| Q |
217 |
cactaaaaatatgaaggagaagaagatgaattactctcacctggtttccacggctcatgannnnnnnnnnnnngatttttcaactccaattcttttggtc |
316 |
Q |
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| T |
2052962 |
cactaaaaatatgaaggagaagaggatgaattactctcacctggtttccacggctcatgatctctctctct--gatttttcaactccaattcttttggcc |
2052865 |
T |
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| Q |
317 |
taatgtttgttgtgtagagtcacacttctatatagtacaaaactgatcggtttgttataacaaattctgaaaccggatgtcaaataatttatgaaccaga |
416 |
Q |
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| T |
2052864 |
taatgtttgttgtgtagagtcacacttctatatagtacaaaactgatcggtttgttataacaaattctgaaaccggatttcaaataatttatgaaccaga |
2052765 |
T |
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| Q |
417 |
atatat |
422 |
Q |
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||||| |
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| T |
2052764 |
gtatat |
2052759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 2062040 - 2061944
Alignment:
| Q |
293 |
ttttcaactccaattcttttggtctaatgtttgttgtgtagagtcacacttctatatagtacaaaactgatcggtttgttataacaaattctgaaac |
389 |
Q |
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| T |
2062040 |
ttttcaacttcaattcttatgctctagtgtttgttgcgtagagtcacactactatatagtacaaaactaattggttagttataacaaattctgaaac |
2061944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 2053070 - 2053000
Alignment:
| Q |
142 |
catacaggtagtgattcatatgaacaaaatttgacagaaatttcgtgaaatattcataatctcgaagacct |
212 |
Q |
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| T |
2053070 |
catacaggtattgattaatatgtataaaatttgacagaactttcgtgaaatattcataatctcgaagacct |
2053000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 293 - 389
Target Start/End: Complemental strand, 2057429 - 2057334
Alignment:
| Q |
293 |
ttttcaactccaattcttttggtctaatgtttgttgtgtagagtcacacttctatatagtacaaaactgatcggtttgttataacaaattctgaaac |
389 |
Q |
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| T |
2057429 |
ttttcaacttcaattcttttgcactaatgtt-gctgtgtagattcacactactatatagtacataactaattggtttgctataacaaattctgaaac |
2057334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 2096075 - 2096014
Alignment:
| Q |
355 |
aaaactgatcggtttgttataacaaattctgaaaccggatgtcaaataatttatgaaccaga |
416 |
Q |
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| T |
2096075 |
aaaactgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccaga |
2096014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 2104896 - 2104832
Alignment:
| Q |
355 |
aaaactgatcggtttgttataacaaattctgaaaccggatgtcaaataatttatgaaccagaata |
419 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| |
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| T |
2104896 |
aaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagaata |
2104832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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