View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_low_13 (Length: 424)
Name: NF19536_low_13
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 424
Target Start/End: Complemental strand, 50082545 - 50082145
Alignment:
| Q |
13 |
aagaaaatgtgggtatgttaaataatagtatatattattatatgtatggaaatgagacattattttagagatatggtgaaagtgaagttgaaagcctgga |
112 |
Q |
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| T |
50082545 |
aagaaaatgtgggtatgttaaataatagtatatattattatatgtatggaaatgagacattattttagagatatggtgaaagtgaagttgaaagcctgga |
50082446 |
T |
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| Q |
113 |
cctgtctaccaaacttatcaagattaataaaaagatggcc--aagactagtaattaggtcggcaaacaaaagtagaaggaagccaaaacaaatatgactg |
210 |
Q |
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| T |
50082445 |
cctgtctaccaaacttatcaagattaa-aaaaagatggccaaaagactagtaattaggtcggcaaacaaaagtagaaggaagccaaaacaaatatgactg |
50082347 |
T |
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| Q |
211 |
aaattaatacaattttgttagttctagaatgtgactgacgcaattatgtgtatgaattggcaggtctgagtctgagtctgagtctgagactacagggcat |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
50082346 |
aaattaatacaactttgttagttctagaatgtgactgacgcaattatgggtatgaattggcag------------gtctgagtctgaggctacagggcat |
50082259 |
T |
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| Q |
311 |
catcaccaatacaaaccaaagaccatccaaataatgttatgtttgtgcctcatctacattaatgccgttttggtgggttagacattattttatcattttt |
410 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50082258 |
catcaccaatacaaagcaaagaccatccaaataatgttatgtttgtgcctcatctacattaatgccgttttggtgggttagacattattttatccttttt |
50082159 |
T |
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| Q |
411 |
ccttttgtggaact |
424 |
Q |
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| T |
50082158 |
ccttttgtggaact |
50082145 |
T |
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