View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19536_low_17 (Length: 328)

Name: NF19536_low_17
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19536_low_17
NF19536_low_17
[»] chr3 (4 HSPs)
chr3 (19-203)||(44421582-44421766)
chr3 (200-317)||(44421101-44421218)
chr3 (200-317)||(42532536-42532651)
chr3 (200-317)||(5530213-5530328)
[»] chr1 (5 HSPs)
chr1 (200-317)||(6831098-6831213)
chr1 (200-317)||(2798233-2798348)
chr1 (200-317)||(6839423-6839538)
chr1 (221-317)||(14478166-14478263)
chr1 (200-317)||(11634327-11634443)
[»] chr2 (1 HSPs)
chr2 (200-317)||(43166067-43166184)
[»] chr8 (4 HSPs)
chr8 (200-317)||(44980882-44980997)
chr8 (200-317)||(32525041-32525156)
chr8 (200-317)||(32529240-32529356)
chr8 (200-317)||(26345446-26345561)
[»] chr7 (2 HSPs)
chr7 (200-317)||(35933147-35933262)
chr7 (200-317)||(47661967-47662083)
[»] chr4 (1 HSPs)
chr4 (200-317)||(28395027-28395142)
[»] scaffold0283 (1 HSPs)
scaffold0283 (200-317)||(16263-16379)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 9e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 44421766 - 44421582
Alignment:
Q  19 atgtagcagaaggccattcttttaagtcattcattattgaaaccctcctaatatttaatatgatacaccctaaatgaatgctcacccgtcgtgtggtata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44421766 atgtagcagaaggccattcttttaagtcattcattattgaaaccctcctaatatttaatatgatacaccctaaatgaatgctcacccgtcgtgtggtata 44421667  T
Q  119 cgtgcgaaggttggcttcaaaccaacaacaccacaaagagcagctggcatccttacagatcctgaacaggtgcaaatatcatagt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44421666 cgtgcgaaggttggcttcaaaccaacaacaccacaaagagcagctggcatccttacagatcctgaacaggtgcaaatatcgtagt 44421582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 44421218 - 44421101
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttttgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttattt 299  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44421218 tagttattggaagttttatgtattgtcaaactatgtaaaacaggttgtgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttattt 44421119  T
Q  300 ctcctttgtcttgttcat 317  Q
    ||||||||||||||||||    
T  44421118 ctcctttgtcttgttcat 44421101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 42532651 - 42532536
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||| | | ||||| ||||| |||  || ||||||||||||||||||||| ||||||||    
T  42532651 tagttattggaagtttt-agtattgttaaactatgtaaaagaggtgtgtatgttcagtttgaatt--attagaccaattatatgaatgaaagcagttatt 42532555  T
Q  299 tctcctttgtcttgttcat 317  Q
    |||||||| ||||||||||    
T  42532554 tctcctttttcttgttcat 42532536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 5530328 - 5530213
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttttgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttattt 299  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||| | | || | |||||||||  || ||||||| |||||||||    
T  5530328 tagttattggaagtttt-agtattgtcaaactatgtaaaacagattgtgtgttcagttt-tttgttgttagaccaatttcataaatgaaagcagttattt 5530231  T
Q  300 ctcctttgtcttgttcat 317  Q
    ||||| ||||||||||||    
T  5530230 ctcctctgtcttgttcat 5530213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 6831213 - 6831098
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||| | | ||||| |||||||||  |||||||||||||||||||||||| ||||||||    
T  6831213 tagttattggaagtttt-agtattgttaaactatgtaaaagaggtgtgtatgttcagtttgtatt--atcagaccaattatatgaatgaaagcagttatt 6831117  T
Q  299 tctcctttgtcttgttcat 317  Q
    |||||||||||||||||||    
T  6831116 tctcctttgtcttgttcat 6831098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 2798348 - 2798233
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||| | | ||||| ||||| |||  |||||||||||||||||||||||| ||||||||    
T  2798348 tagttattggaagtttt-agtattgttaaactatgtaaaagaggtgtgtatgttcagtttgaatt--atcagaccaattatatgaatgaaagcagttatt 2798252  T
Q  299 tctcctttgtcttgttcat 317  Q
    |||||||||||||||||||    
T  2798251 tctcctttgtcttgttcat 2798233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 6839538 - 6839423
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||| | | ||||| ||||| |||  || ||||||||||||||||||||| ||||||||    
T  6839538 tagttattggaagtttt-agtattgttaaactatgtaaaagaggtgtgtatgttcagtttgaatt--attagaccaattatatgaatgaaagcagttatt 6839442  T
Q  299 tctcctttgtcttgttcat 317  Q
    |||||||| ||||||||||    
T  6839441 tctcctttttcttgttcat 6839423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 14478263 - 14478166
Alignment:
Q  221 attgtcaaactatgtaaaacaggttttgtgttctgtttgtatttt-atcagaccaattatatgaatgaaaacagttatttctcctttgtcttgttcat 317  Q
    ||||| ||||||||||||| ||||| | ||||| |||||| |||| ||||||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  14478263 attgttaaactatgtaaaagaggttgtatgttcagtttgttttttcatcagacaaattacatgaatgaaagcagttatttctcctttgtcttgttcat 14478166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 11634327 - 11634443
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttttgt--gttctgtttgtattttatcagaccaattatatgaatgaaaacagttat 297  Q
    ||||||||||||||||| |||||||| |||||||||||||  |||| |||  |||  ||||||||   |||||||||||||| ||||||||| |||||||    
T  11634327 tagttattggaagtttt-agtattgttaaactatgtaaaagtggttgtgtatgtttagtttgtatc--atcagaccaattatttgaatgaaagcagttat 11634423  T
Q  298 ttctcctttgtcttgttcat 317  Q
    ||||||| ||||||||||||    
T  11634424 ttctcctctgtcttgttcat 11634443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 43166184 - 43166067
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| | | ||||| ||||   |||| ||||||||||||||||||||||| ||||||||    
T  43166184 tagttattggaagtttt-agtattgtcaaactatgtaaaagaggtgtgtatgttcagttttgtttttttcagaccaattatatgaatgaaagcagttatt 43166086  T
Q  299 tctcctttgtcttgttcat 317  Q
    |||||||||||||||||||    
T  43166085 tctcctttgtcttgttcat 43166067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 44980882 - 44980997
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||||||||||| |||||||  ||||||||||||| |||| | ||||||| |||||||||  |||||||||||||||||||||||| ||||||||    
T  44980882 tagttattggaagtttt-agtattgctaaactatgtaaaagaggtgtgtgtgttcagtttgtatt--atcagaccaattatatgaatgaaagcagttatt 44980978  T
Q  299 tctcctttgtcttgttcat 317  Q
    |||||| ||||||||||||    
T  44980979 tctcctctgtcttgttcat 44980997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 32525041 - 32525156
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||| | | ||||| ||||| |||  || ||||||||||||||||||||| ||||||||    
T  32525041 tagttattggaagtttt-agtattgttaaactatgtaaaagaggtgtgtatgttcagtttgaatt--attagaccaattatatgaatgaaagcagttatt 32525137  T
Q  299 tctcctttgtcttgttcat 317  Q
    |||||||| ||||||||||    
T  32525138 tctcctttttcttgttcat 32525156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 32529240 - 32529356
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt--tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttat 297  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||| |  | ||||| ||||| |||  || ||||||||||||||||||||| |||||||    
T  32529240 tagttattggaagtttt-agtattgttaaactatgtaaaagaggtgtgttatgttcagtttgaatt--attagaccaattatatgaatgaaagcagttat 32529336  T
Q  298 ttctcctttgtcttgttcat 317  Q
    ||||||||| ||||||||||    
T  32529337 ttctcctttttcttgttcat 32529356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 26345446 - 26345561
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||| ||||||| |||||||| ||||||||||||| |||| | | ||||  |||||||||  |||||||||||||||||||||||| ||||||||    
T  26345446 tagttattgaaagtttt-agtattgttaaactatgtaaaagaggtgtgtatgtttagtttgtatt--atcagaccaattatatgaatgaaagcagttatt 26345542  T
Q  299 tctcctttgtcttgttcat 317  Q
    ||| |||| ||||||||||    
T  26345543 tcttctttttcttgttcat 26345561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 35933262 - 35933147
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||||||||||| |||||||| ||||||||||||| |||| | | ||||| |||||||||  |||||||||||||||||||||||| ||||||||    
T  35933262 tagttattggaagtttt-agtattgttaaactatgtaaaagaggtgtgtatgttcagtttgtatt--atcagaccaattatatgaatgaaagcagttatt 35933166  T
Q  299 tctcctttgtcttgttcat 317  Q
    |||||||| ||||||||||    
T  35933165 tctcctttttcttgttcat 35933147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 47662083 - 47661967
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttttgtgt--tctgtttgtattttatcagaccaattatatgaatgaaaacagttat 297  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||| |||||  || |||||||||  ||||||||||||  |||||||||| |||||||    
T  47662083 tagttattggaagtttt-agtattgttaaactatgtaaaagaggttgtgtgtgttcagtttgtatt--atcagaccaatttcatgaatgaaatcagttat 47661987  T
Q  298 ttctcctttgtcttgttcat 317  Q
    ||||||| ||||||||||||    
T  47661986 ttctcctctgtcttgttcat 47661967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 28395027 - 28395142
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaaaacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttatt 298  Q
    ||||||||||||||||| |||||||| || |||||||||| |||| | | ||||| |||||||||  |||||||||||||||||||||||| ||||||||    
T  28395027 tagttattggaagtttt-agtattgttaatctatgtaaaagaggtgtgtatgttcagtttgtatt--atcagaccaattatatgaatgaaagcagttatt 28395123  T
Q  299 tctcctttgtcttgttcat 317  Q
    |||||||||||||||||||    
T  28395124 tctcctttgtcttgttcat 28395142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 16263 - 16379
Alignment:
Q  200 tagttattggaagtttttagtattgtcaaactatgtaa-aacaggttt-tgtgttctgtttgtattttatcagaccaattatatgaatgaaaacagttat 297  Q
    ||||||||||||||||| |||||||  ||||||||||| || |||| | ||||||| |||||||||  |||||||||||||||||||||||| |||||||    
T  16263 tagttattggaagtttt-agtattgctaaactatgtaagaagaggtgtgtgtgttcagtttgtatt--atcagaccaattatatgaatgaaagcagttat 16359  T
Q  298 ttctcctttgtcttgttcat 317  Q
    ||||||| ||||||||||||    
T  16360 ttctcctctgtcttgttcat 16379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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