View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19536_low_18 (Length: 307)

Name: NF19536_low_18
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19536_low_18
NF19536_low_18
[»] chr1 (14 HSPs)
chr1 (4-252)||(34328518-34328762)
chr1 (110-228)||(39913598-39913716)
chr1 (112-228)||(26066447-26066563)
chr1 (4-58)||(7403543-7403597)
chr1 (4-58)||(26066246-26066300)
chr1 (112-178)||(28862649-28862715)
chr1 (15-58)||(28862826-28862869)
chr1 (4-58)||(18887705-18887759)
chr1 (4-58)||(36360602-36360655)
chr1 (4-58)||(45472277-45472331)
chr1 (112-193)||(25593364-25593445)
chr1 (4-85)||(25593593-25593674)
chr1 (112-172)||(18887906-18887966)
chr1 (247-279)||(34328425-34328457)
[»] chr8 (10 HSPs)
chr8 (110-228)||(17339812-17339930)
chr8 (110-228)||(27656689-27656807)
chr8 (110-228)||(17316262-17316380)
chr8 (7-85)||(17316388-17316466)
chr8 (7-85)||(17339938-17340016)
chr8 (112-194)||(26702500-26702582)
chr8 (4-58)||(45116172-45116226)
chr8 (116-252)||(14402057-14402192)
chr8 (112-178)||(44320583-44320649)
chr8 (112-178)||(45115959-45116025)
[»] chr7 (18 HSPs)
chr7 (110-238)||(3761560-3761688)
chr7 (4-58)||(43379390-43379444)
chr7 (4-85)||(3761830-3761911)
chr7 (4-56)||(1296911-1296963)
chr7 (124-200)||(20909507-20909583)
chr7 (112-178)||(1296698-1296764)
chr7 (4-58)||(40445647-40445701)
chr7 (4-46)||(45173003-45173045)
chr7 (112-178)||(45173192-45173258)
chr7 (4-58)||(46791250-46791304)
chr7 (112-178)||(47867779-47867845)
chr7 (4-85)||(40793848-40793929)
chr7 (112-188)||(8194562-8194638)
chr7 (112-172)||(43379591-43379651)
chr7 (16-58)||(16794694-16794736)
chr7 (16-58)||(16796934-16796976)
chr7 (112-178)||(40445848-40445914)
chr7 (112-178)||(46791037-46791103)
[»] chr2 (9 HSPs)
chr2 (112-200)||(30937674-30937762)
chr2 (110-228)||(24668205-24668323)
chr2 (4-58)||(9639319-9639373)
chr2 (115-177)||(31434364-31434426)
chr2 (4-85)||(24668487-24668568)
chr2 (112-178)||(9639520-9639586)
chr2 (4-58)||(28423557-28423611)
chr2 (18-91)||(21535128-21535201)
chr2 (114-178)||(28423760-28423824)
[»] chr4 (17 HSPs)
chr4 (110-228)||(1789939-1790057)
chr4 (110-228)||(13900733-13900851)
chr4 (4-58)||(1590759-1590813)
chr4 (110-228)||(17483345-17483463)
chr4 (4-58)||(17916112-17916166)
chr4 (112-228)||(32715956-32716072)
chr4 (4-59)||(20971586-20971641)
chr4 (4-82)||(4617628-4617706)
chr4 (112-178)||(18623232-18623298)
chr4 (4-58)||(18623445-18623499)
chr4 (4-58)||(46517516-46517570)
chr4 (2-59)||(1790201-1790258)
chr4 (4-56)||(17483608-17483660)
chr4 (110-178)||(34746355-34746423)
chr4 (4-79)||(13900515-13900590)
chr4 (4-58)||(32716219-32716273)
chr4 (4-73)||(34746144-34746213)
[»] chr6 (6 HSPs)
chr6 (4-58)||(22864731-22864785)
chr6 (112-178)||(22864518-22864584)
chr6 (4-58)||(9095161-9095215)
chr6 (16-82)||(31859417-31859483)
chr6 (112-178)||(9094948-9095014)
chr6 (110-178)||(34111940-34112008)
[»] chr5 (11 HSPs)
chr5 (4-58)||(27013751-27013805)
chr5 (112-178)||(42343203-42343269)
chr5 (4-59)||(42343416-42343471)
chr5 (112-178)||(6550731-6550797)
chr5 (112-178)||(43294934-43295000)
chr5 (4-46)||(6552714-6552756)
chr5 (112-186)||(11818920-11818994)
chr5 (4-58)||(30617434-30617488)
chr5 (4-46)||(25052664-25052706)
chr5 (4-58)||(43295147-43295201)
chr5 (114-178)||(30617626-30617690)
[»] chr3 (18 HSPs)
chr3 (110-178)||(4509988-4510056)
chr3 (110-178)||(32426323-32426391)
chr3 (4-59)||(25060022-25060077)
chr3 (112-178)||(8263452-8263518)
chr3 (4-58)||(8263663-8263717)
chr3 (4-58)||(40468291-40468345)
chr3 (4-58)||(51548615-51548669)
chr3 (4-58)||(2285139-2285193)
chr3 (112-178)||(2285340-2285406)
chr3 (4-58)||(12487005-12487059)
chr3 (112-178)||(40468492-40468558)
chr3 (112-178)||(51548816-51548882)
chr3 (4-58)||(1275473-1275527)
chr3 (4-58)||(4510201-4510255)
chr3 (110-172)||(8117307-8117369)
chr3 (4-58)||(32426536-32426590)
chr3 (4-56)||(4120877-4120929)
chr3 (4-44)||(9556877-9556917)
[»] scaffold0325 (1 HSPs)
scaffold0325 (4-46)||(3761-3803)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 34328762 - 34328518
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaagtttgatatatattcttaatg 103  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  34328762 atgaagcaacaagatcaagaaaatgtggttgtttgttcaaggtacgtggatatgttagtagggaattaaatgcttggaagtttgatat----tcttaatg 34328667  T
Q  104 attgggcatctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34328666 attgggcatctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtta 34328567  T
Q  204 aacatcaactttcacggaagcttcatctgtatttgatttcacatcaacc 252  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||    
T  34328566 aacatcaactttcacggaagcttcatccgtatttggttttacatcaacc 34328518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 39913716 - 39913598
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatc 209  Q
    |||| ||||||||  |||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||||  |||||||||||||||| ||    
T  39913716 catcgttatctttctatgtatcttggcttgaaaagaaatgagtcgtgtctaattcgttgtcaccaagttcagacacaccgaaattaacatgtaaaacctc 39913617  T
Q  210 aactttcacggaagcttca 228  Q
    || ||||||||||||||||    
T  39913616 aattttcacggaagcttca 39913598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 26066447 - 26066563
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatcaa 211  Q
    |||||||||||  |||||||| |  | |||||||| ||||||||||||||||||||||||| ||||| | ||||| | ||||| ||   | |||| || |    
T  26066447 tctttatctttctatgtatctcgtgtcgaaaagaaatgagccgtgtccacttcgttgtcacgaagtttacacacatcggaattgacgctttaaacctcta 26066546  T
Q  212 ctttcacggaagcttca 228  Q
    |||| ||||||||||||    
T  26066547 ctttaacggaagcttca 26066563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 7403543 - 7403597
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  7403543 atgaagcaacgggatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 7403597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 26066300 - 26066246
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  26066300 atgaagcaacgggatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 26066246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 28862715 - 28862649
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||||||| |  |||||||||| ||||  ||||||||||||||||||| |||||    
T  28862715 tctttatctttccatgtatctcgtgttgaaaagaaatgagttgtgtccacttcgttgtcacgaagtt 28862649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 28862826 - 28862869
Alignment:
Q  15 agatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||    
T  28862826 agatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 28862869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 18887759 - 18887705
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||| ||| ||||||||||||||||| |||||||| |||||  ||||||||||    
T  18887759 atgaagtaacgagatcaagaaaatgtgggtgtttgttgaaggtgcgtggatatgt 18887705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 36360655 - 36360602
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||  ||||||||||    
T  36360655 atgaagcaacaagatcaagtaaatgtgggtgttt-ttcaaggtgcgtggatatgt 36360602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 45472277 - 45472331
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||| ||| ||||||||||||||  ||||||||||    
T  45472277 atgaagcaacgggatcaagaaaatatgggtgtttgttcaaggtgcgtggatatgt 45472331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 193
Target Start/End: Complemental strand, 25593445 - 25593364
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaat 193  Q
    ||||||||||| ||||| |||  ||| |||||||| ||||  |||||||||| |||||||| |||||  ||||||| |||||    
T  25593445 tctttatctttccatgtctctcagctcgaaaagaaatgagatgtgtccactttgttgtcacgaagtttggacacactagaat 25593364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 25593593 - 25593674
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaagtt 85  Q
    ||||||||||| |||||||||||||||| | |||||||||| |   |||||||||   || ||||  |||||||||||||||    
T  25593593 atgaagcaacaggatcaagaaaatgtgggtatttgttcaagttgcatggatatgtcgttaaggaagaaaatgcttggaagtt 25593674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 18887906 - 18887966
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcac 172  Q
    ||||||||||| || |||||| || | |||||||| ||||  |||||||||||||||||||    
T  18887906 tctttatctttccaagtatctcgggtcgaaaagaaatgagttgtgtccacttcgttgtcac 18887966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 34328457 - 34328425
Alignment:
Q  247 tcaaccagatcatcatccacattcacaaccata 279  Q
    |||||| ||||||||||||||||||||||||||    
T  34328457 tcaaccggatcatcatccacattcacaaccata 34328425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 17339930 - 17339812
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatc 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||  ||||  |||||| ||||||| | | ||||| | ||    
T  17339930 catctttatctttccatgtatcttggcttgaaaagaattgaggtgtgtccacttcgttgtcacagagtttggacacatcagaatttaaacgtaaagcctc 17339831  T
Q  210 aactttcacggaagcttca 228  Q
    |||||||||||||| ||||    
T  17339830 aactttcacggaagtttca 17339812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 27656807 - 27656689
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatc 209  Q
    |||||||||||||||||||||| ||||||||||||||||||| | ||||||||| || | |||||||||| |||||| || ||||||||||||||   ||    
T  27656807 catctttatcttttcatgtatcatggcttgaaaagaattgagtcatgtccactttgtcggcaccaagttcggacacatcataattaacatgtaaaggttc 27656708  T
Q  210 aactttcacggaagcttca 228  Q
    |||||||||| || |||||    
T  27656707 aactttcacgaaaacttca 27656689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 17316380 - 17316262
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatc 209  Q
    ||||||||||||| | ||||| ||||||||||||||||||||  ||||||| ||||||||||| |||||  |||||| ||||||| | | ||||| | ||    
T  17316380 catctttatctttccctgtatattggcttgaaaagaattgagttgtgtccatttcgttgtcacaaagtttggacacatcagaatttaaacgtaaagcctc 17316281  T
Q  210 aactttcacggaagcttca 228  Q
    |||||||||| ||| ||||    
T  17316280 aactttcacgaaagtttca 17316262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 17316388 - 17316466
Alignment:
Q  7 aagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaagtt 85  Q
    ||||||| ||||||||||||||||| |||||||||||| | ||||||||||||| |  ||||||||| |||||||||||    
T  17316388 aagcaacgagatcaagaaaatgtgggtgtttgttcaagatttgtggatatgttattcaggaattaaacgcttggaagtt 17316466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 17339938 - 17340016
Alignment:
Q  7 aagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaagtt 85  Q
    ||||||| ||||||||||||||||| |||||||||||| | ||||||||||| | || ||||||||| |||||||||||    
T  17339938 aagcaacgagatcaagaaaatgtgggtgtttgttcaagatttgtggatatgtcattaaggaattaaacgcttggaagtt 17340016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 26702582 - 26702500
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaatt 194  Q
    ||||||||||| ||||||||| |  | |||||||| ||||||||||||||||||||||||| ||||| | ||||| |||||||    
T  26702582 tctttatctttccatgtatctcgtgtcgaaaagaaatgagccgtgtccacttcgttgtcacgaagtttacacacatcagaatt 26702500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 45116172 - 45116226
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||    
T  45116172 atgaagcaacgagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 45116226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 252
Target Start/End: Original strand, 14402057 - 14402192
Alignment:
Q  116 tatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatcaacttt 215  Q
    ||||||| ||||||| || | ||||||| || |||| |||||| | ||| ||| |||||||||  |||||||  |||||||||||| |||| |||||  |    
T  14402057 tatctttccatgtatattcgattgaaaacaaatgagtcgtgtcaaattcattgacaccaagttgggacacactggaattaacatgtgaaacttcaac-at 14402155  T
Q  216 cacggaagcttcatctgtatttgatttcacatcaacc 252  Q
     | ||||||||||||  |||||||||| |||||||||    
T  14402156 gaaggaagcttcatcaatatttgatttgacatcaacc 14402192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 44320649 - 44320583
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| || || ||| || | ||||| || ||||||||||||||||||||||||| |||||    
T  44320649 tctttatctttccacgtgtctcgggtcgaaaataaatgagccgtgtccacttcgttgtcacgaagtt 44320583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 45116025 - 45115959
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||||||| |  | ||||| || |||| |||||||||||||||||||| |||||    
T  45116025 tctttatctttccatgtatctcgtgtcgaaaataaatgagtcgtgtccacttcgttgtcacgaagtt 45115959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 110 - 238
Target Start/End: Complemental strand, 3761688 - 3761560
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatc 209  Q
    |||| ||||||||  |||||||||||||||||||||||||||  |||| ||||| |||| |||||| | | |||||||||||||||||||||||| | ||    
T  3761688 catcattatctttctatgtatcttggcttgaaaagaattgagatgtgttcactttgttgacaccaattgcggacacaccagaattaacatgtaaagcttc 3761589  T
Q  210 aactttcacggaagcttcatctgtatttg 238  Q
    ||| ||  | ||||||||||| |||||||    
T  3761588 aacattggcagaagcttcatccgtatttg 3761560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 43379444 - 43379390
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||    
T  43379444 atgaagcaacgagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 43379390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 3761830 - 3761911
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaagtt 85  Q
    ||||||||||  |||||||||||||||| |||||||||||| |  |||||||||||||| |  |||| || |||||||||||    
T  3761830 atgaagcaacgggatcaagaaaatgtgggtgtttgttcaagttgcgtggatatgttagttgaaaattgaaggcttggaagtt 3761911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 1296911 - 1296963
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatat 56  Q
    ||||||||||| |||||||||||||||| || ||||||||||| |||||||||    
T  1296911 atgaagcaacaggatcaagaaaatgtgggtggttgttcaaggtgtgtggatat 1296963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 200
Target Start/End: Original strand, 20909507 - 20909583
Alignment:
Q  124 catgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatg 200  Q
    |||||||||||||| |||||||| |||| |||||| |||| |||| |||||||||  |||||||| ||| |||||||    
T  20909507 catgtatcttggctcgaaaagaaatgagtcgtgtcaactttgttggcaccaagttgggacacaccggaactaacatg 20909583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 1296764 - 1296698
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||||||| |  | |||||||| ||||| ||||||||||||||||||| |||||    
T  1296764 tctttatctttccatgtatctcgtgtcgaaaagaaatgagctgtgtccacttcgttgtcacgaagtt 1296698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 40445701 - 40445647
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  40445701 atgaagcaacgggatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 40445647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 45173045 - 45173003
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggt 46  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  45173045 atgaagcaacgagatcaagaaaatgtgggtgtttgttcaaggt 45173003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 45173192 - 45173258
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||| ||| || | ||||| || ||||||||||||||||||||||||| |||||    
T  45173192 tctttatctttccatgtgtctcgggtcgaaaataaatgagccgtgtccacttcgttgtcacgaagtt 45173258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 46791250 - 46791304
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||||  ||||||||||||||| ||||||||||||||  ||||||||||    
T  46791250 atgaagcaacagaatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 46791304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 47867779 - 47867845
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||||||| |  | |||||||| |||| |||||||||||||||||||| |||||    
T  47867779 tctttatctttccatgtatctcgtgtcgaaaagaaatgagtcgtgtccacttcgttgtcacgaagtt 47867845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 40793848 - 40793929
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaagtt 85  Q
    ||||||||||  |||||||||||||||  |||||||||||||| |||| ||||||   |||||||   ||||||||||||||    
T  40793848 atgaagcaacgggatcaagaaaatgtgtgtgtttgttcaaggtgtgtgaatatgtcgttagggaaaacaatgcttggaagtt 40793929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 188
Target Start/End: Original strand, 8194562 - 8194638
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacacc 188  Q
    ||||||||||| ||||| ||| |||| |||||||| ||||  ||||||||||| ||||||| |||||  ||||||||    
T  8194562 tctttatctttccatgtctctcggctcgaaaagaaatgagatgtgtccacttcattgtcacgaagtttggacacacc 8194638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 43379591 - 43379651
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcac 172  Q
    ||||||||||| ||||| |||||| | ||||| || |||| ||||||||||||||||||||    
T  43379591 tctttatctttccatgtgtcttgggtcgaaaataaatgagtcgtgtccacttcgttgtcac 43379651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 16794736 - 16794694
Alignment:
Q  16 gatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||||||||| ||||||||||||||  ||||||||||    
T  16794736 gatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 16794694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 16796976 - 16796934
Alignment:
Q  16 gatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||||||||| ||||||||||||||  ||||||||||    
T  16796976 gatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 16796934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 40445848 - 40445914
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||| ||| || | ||||| || ||||||||||||||||| ||||||| |||||    
T  40445848 tctttatctttccatgtgtctcgggtcgaaaataaatgagccgtgtccacttcattgtcacgaagtt 40445914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 46791103 - 46791037
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||| ||| || | ||||| ||||||| ||||||||||| |||||||| |||||    
T  46791103 tctttatctttccatgtgtctcgggtcgaaaataattgagtcgtgtccactttgttgtcacgaagtt 46791037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 30937762 - 30937674
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatg 200  Q
    ||||||||||| |||||| |||||||||||||||| ||||||||||| ||||| ||| |||||||||  ||||||||| ||||||||||    
T  30937762 tctttatctttccatgtaacttggcttgaaaagaaatgagccgtgtcaacttcattgacaccaagttgggacacaccaaaattaacatg 30937674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 24668323 - 24668205
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatc 209  Q
    ||||||||||||| |||||||||||||||| |||||| ||||| |||||||||| |||| |||||||||  ||||||   || |||||||||||| | ||    
T  24668323 catctttatctttccatgtatcttggcttgtaaagaaatgagctgtgtccactttgttgacaccaagttgggacacattggatttaacatgtaaagcttc 24668224  T
Q  210 aactttcacggaagcttca 228  Q
    ||| ||  |||||||||||    
T  24668223 aacattttcggaagcttca 24668205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 9639373 - 9639319
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  9639373 atgaagcaacgggatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 9639319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 31434364 - 31434426
Alignment:
Q  115 ttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagt 177  Q
    |||||||||||||| ||| || | ||||| || ||||||||||||||||||||||||| ||||    
T  31434364 ttatcttttcatgtgtctcgggtcgaaaataaatgagccgtgtccacttcgttgtcacgaagt 31434426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 24668487 - 24668568
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaagtt 85  Q
    ||||||||||  | |||||||||||||| ||| ||| |||| |   | |||||||||||||||||||||| |||||||||||    
T  24668487 atgaagcaacggggtcaagaaaatgtgggtgtatgtccaagttgcatcgatatgttagtagggaattaaaggcttggaagtt 24668568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 9639520 - 9639586
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| |||| |||| |  | |||||||| ||||||||||| ||||||||||||| |||||    
T  9639520 tctttatctttccatgaatctcgtgtcgaaaagaaatgagccgtgtcaacttcgttgtcacgaagtt 9639586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 28423611 - 28423557
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  ||||| | |||||||| |||||||||||||| |||||||||||    
T  28423611 atgaagcaacgggatcatggaaatgtgggtgtttgttcaaggtgtgtggatatgt 28423557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 21535128 - 21535201
Alignment:
Q  18 tcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaagtttgatat 91  Q
    |||||||||  ||| |||||||||||||| ||||||||||||  || ||||  ||| ||||||||||| |||||    
T  21535128 tcaagaaaacatggatgtttgttcaaggtgtgtggatatgttgttaaggaagaaaacgcttggaagttagatat 21535201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 28423760 - 28423824
Alignment:
Q  114 tttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||||||| ||| || |  ||||||| ||||  ||||||||||||||||||| |||||    
T  28423760 tttatcttttcatgtctctcggttcaaaaagaaatgagatgtgtccacttcgttgtcacaaagtt 28423824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 1790057 - 1789939
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatc 209  Q
    ||||||||||||| ||| |||||||||||||||| ||||||   |||||||||| |||||||| ||| | ||||||| ||||||| ||||||||| | ||    
T  1790057 catctttatctttccatatatcttggcttgaaaaaaattgaattgtgtccactttgttgtcacgaagattagacacaacagaattgacatgtaaagcctc 1789958  T
Q  210 aactttcacggaagcttca 228  Q
    |||| ||| || |||||||    
T  1789957 aactatcatgggagcttca 1789939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 13900733 - 13900851
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatc 209  Q
    |||||||||||||  ||||||||||||||||||||||   ||  ||||||||||  ||||||| ||| |  |||||||| ||||| ||||||||| | ||    
T  13900733 catctttatctttcaatgtatcttggcttgaaaagaaaaaagttgtgtccacttttttgtcacgaagattggacacaccggaattcacatgtaaagcctc 13900832  T
Q  210 aactttcacggaagcttca 228  Q
    ||||||||| |||||||||    
T  13900833 aactttcacagaagcttca 13900851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 1590759 - 1590813
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||| |||||||||||||||| ||||||||||||||  ||||||||||    
T  1590759 atgaagcaacaggatcaagaaaatgtggatgtttgttcaaggtgcgtggatatgt 1590813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 17483463 - 17483345
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatc 209  Q
    |||||||||||||  |||||||| || | |||||||| |||||||||||||||| |||||||| |||||   ||||| | ||||| ||   | |||| ||    
T  17483463 catctttatctttcaatgtatctcgggtagaaaagaaatgagccgtgtccactttgttgtcacgaagttttcacacatcggaattgactcttgaaacctc 17483364  T
Q  210 aactttcacggaagcttca 228  Q
    |||||| ||||||||||||    
T  17483363 aactttaacggaagcttca 17483345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 17916112 - 17916166
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||    
T  17916112 atgaagcaacgagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 17916166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 32716072 - 32715956
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacacaccagaattaacatgtaaaacatcaa 211  Q
    ||||||||||| ||||||||| |  | |||||||| |||| |||||||||||||||||||| ||||| | ||||| | ||||| || | | || | || |    
T  32716072 tctttatctttccatgtatctcgtgtcgaaaagaaatgagtcgtgtccacttcgttgtcacgaagtttacacacatcggaattgacgtctgaagcctcta 32715973  T
Q  212 ctttcacggaagcttca 228  Q
    |||| ||||||||||||    
T  32715972 ctttaacggaagcttca 32715956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 20971641 - 20971586
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgtt 59  Q
    ||||||||||| |||||||||||||||| |||||||||||| |  |||||||||||    
T  20971641 atgaagcaacaggatcaagaaaatgtgggtgtttgttcaagttgcgtggatatgtt 20971586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 4617628 - 4617706
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaa 82  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||  ||||||||||   |||||||   |||||||||||    
T  4617628 atgaaggaacgagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgtcgttagggaagacaatgcttggaa 4617706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 18623298 - 18623232
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||||||| |  | |||||||| |||| |||||||||||||||||||| |||||    
T  18623298 tctttatctttccatgtatctcgtgtcgaaaagaaatgagtcgtgtccacttcgttgtcacgaagtt 18623232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 18623445 - 18623499
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  ||||||||||| |||| |||||||||||||| |||||||||||    
T  18623445 atgaagcaacgggatcaagaaaaagtgggtgtttgttcaaggtgtgtggatatgt 18623499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 46517570 - 46517516
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  46517570 atgaagcaacgggatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 46517516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 1790201 - 1790258
Alignment:
Q  2 gaatgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgtt 59  Q
    ||||||| |||||||||||||||||||| | ||||| || ||||| ||||||||||||    
T  1790201 gaatgaatcaacaagatcaagaaaatgtaggtgtttatttaaggtgtgtggatatgtt 1790258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 17483608 - 17483660
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatat 56  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||  ||||||||    
T  17483608 atgaagcaacgagatcaagaaaatgtgggtgtttgttcaaagtgcgtggatat 17483660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 34746355 - 34746423
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    |||||||||||||  |||||||||| |||||||| || ||||  |||| |||||||||| |||||||||    
T  34746355 catctttatctttctatgtatcttgacttgaaaataaatgagttgtgtacacttcgttgacaccaagtt 34746423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 13900590 - 13900515
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttg 79  Q
    |||||||||| ||||||||||| | ||  ||||||||||||||   ||||||||||| || ||||||||| |||||    
T  13900590 atgaagcaacgagatcaagaaattatgagtgtttgttcaaggtgcatggatatgttattaaggaattaaacgcttg 13900515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 32716219 - 32716273
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| |||||||||| |||  ||||||||||    
T  32716219 atgaagcaacgggatcaagaaaatgtgggtgtttgttcatggtgcgtggatatgt 32716273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 34746213 - 34746144
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaa 73  Q
    |||||||||  ||||||| |||| |||| | | |||||||| | ||||||||||||| ||||||||||||    
T  34746213 atgaagcaatgagatcaaaaaaacgtgggtttatgttcaagttgtgtggatatgttaatagggaattaaa 34746144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 22864731 - 22864785
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  22864731 atgaagcaacaagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 22864785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 22864584 - 22864518
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||||||| |   ||||||||| ||||||||||||||||||||||||| |||||    
T  22864584 tctttatctttccatgtatctcgtgctgaaaagaaatgagccgtgtccacttcgttgtcacgaagtt 22864518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 9095161 - 9095215
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  9095161 atgaagcaacgggatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 9095215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 31859417 - 31859483
Alignment:
Q  16 gatcaagaaaatgtggctgtttgttcaaggtatgtggatatgttagtagggaattaaatgcttggaa 82  Q
    |||||||||||||||| ||||||||||||||  ||||||||||   |||||||| |||| |||||||    
T  31859417 gatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgtcgttagggaataaaatacttggaa 31859483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 9095014 - 9094948
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||| |||  | | ||||| || ||||||||||||||||||||||||| |||||    
T  9095014 tctttatctttccatgtgtctcaggtcgaaaataaatgagccgtgtccacttcgttgtcacgaagtt 9094948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 178
Target Start/End: Original strand, 34111940 - 34112008
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||| ||||||| || |||| ||| ||||||||||| |||||||||||  ||| |||| |||||||||    
T  34111940 catctatatctttccaagtatattgacttgaaaagaaatgagccgtgtcagctttgttgacaccaagtt 34112008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 27013805 - 27013751
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  27013805 atgaagcaacaagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 27013751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 42343269 - 42343203
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    |||||||||||||||||||||||  | |||||||| |||| |||||||||||||||||||| |||||    
T  42343269 tctttatcttttcatgtatcttgtgtcgaaaagaaatgagtcgtgtccacttcgttgtcacaaagtt 42343203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 42343416 - 42343471
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgtt 59  Q
    |||||||||| ||||||||||||||||| ||||||||||||||  |||||||||||    
T  42343416 atgaagcaacgagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgtt 42343471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 6550797 - 6550731
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||||||||| ||| |  | |||||||| ||||||||||||||||||||||||| |||||    
T  6550797 tctttatcttttcatgtttctcgtgtcgaaaagaaatgagccgtgtccacttcgttgtcacgaagtt 6550731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 43295000 - 43294934
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||||||||||||| |  | |||||||| ||| ||||||||||||||||||||| |||||    
T  43295000 tctttatcttttcatgtatctcgtgtcgaaaagaaatgacccgtgtccacttcgttgtcacgaagtt 43294934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 6552714 - 6552756
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggt 46  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  6552714 atgaagcaacgagatcaagaaaatgtgggtgtttgttcaaggt 6552756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 11818994 - 11818920
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagttcagacaca 186  Q
    ||||||||||| ||||||||| |  | ||||| || |||||||||||||||| |||||||| ||||||| |||||    
T  11818994 tctttatctttccatgtatctcgtgtcgaaaataaatgagccgtgtccacttagttgtcacgaagttcacacaca 11818920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 30617488 - 30617434
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||  ||||||||||    
T  30617488 atgaggcaacgagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 30617434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 25052664 - 25052706
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggt 46  Q
    |||||||||| |||| |||||||||||| ||||||||||||||    
T  25052664 atgaagcaacgagataaagaaaatgtgggtgtttgttcaaggt 25052706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 43295147 - 43295201
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||| ||| ||||||||||||||  ||||||||||    
T  43295147 atgaagcaacgggatcaagaaaatatgggtgtttgttcaaggtgcgtggatatgt 43295201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 30617626 - 30617690
Alignment:
Q  114 tttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||| ||||| ||| || | ||||| || |||| |||||||||||||||||||| |||||    
T  30617626 tttatctttccatgtgtctcgggtcgaaaataaatgagtcgtgtccacttcgttgtcacgaagtt 30617690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 4510056 - 4509988
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||||| ||||| ||| |||| |||||||| |||| |||||||||||||||||||| |||||    
T  4510056 catctttatctttccatgtctctcggctcgaaaagaaatgagtcgtgtccacttcgttgtcacgaagtt 4509988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 32426391 - 32426323
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||||||||||||||| |  | |||||||| ||| ||||||||||||||||||||| |||||    
T  32426391 catctttatcttttcatgtatctcgtgtcgaaaagaaatgacccgtgtccacttcgttgtcacgaagtt 32426323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 25060077 - 25060022
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgtt 59  Q
    ||||||||||||||||||||||||| || ||||||||||||||  |||||||||||    
T  25060077 atgaagcaacaagatcaagaaaatgggggtgtttgttcaaggtgcgtggatatgtt 25060022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 8263518 - 8263452
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||||||| |  | |||||||| ||||||||||||||||||||||||| |||||    
T  8263518 tctttatctttccatgtatctcgtgtcgaaaagaaatgagccgtgtccacttcgttgtcacgaagtt 8263452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 8263663 - 8263717
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||    
T  8263663 atgaagcaacgagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 8263717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 40468345 - 40468291
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| |||||||||||||| |||||||||||    
T  40468345 atgaagcaacgggatcaagaaaatgtgggtgtttgttcaaggtgtgtggatatgt 40468291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 51548669 - 51548615
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||| ||||||||||||||||| ||||||||||||||  ||||||||||    
T  51548669 atgaagcaacgagatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 51548615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 2285193 - 2285139
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  2285193 atgaagcaacgggatcaagaaaatgtgggtgtttgttcaaggtgcgtggatatgt 2285139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 2285340 - 2285406
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||| ||| || | ||||| || ||||||||||||||||||||||||| |||||    
T  2285340 tctttatctttccatgtgtctcgggtcgaaaataaatgagccgtgtccacttcgttgtcacgaagtt 2285406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 12487005 - 12487059
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  12487005 atgaagcaacgggatcaagaaaatgtggttgtttgttcaaggtgcgtggatatgt 12487059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 40468492 - 40468558
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||||||| |  | |||||||| ||||| ||||||||||||||||||| |||||    
T  40468492 tctttatctttccatgtatctcgtgtcgaaaagaaatgagctgtgtccacttcgttgtcacgaagtt 40468558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 51548816 - 51548882
Alignment:
Q  112 tctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcaccaagtt 178  Q
    ||||||||||| ||||| ||| || | ||||| || ||||||||||||||||||||||||| |||||    
T  51548816 tctttatctttccatgtgtctcgggtcgaaaataaatgagccgtgtccacttcgttgtcacgaagtt 51548882  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 1275527 - 1275473
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||| |||||||||||| ||  ||||||||||||||  ||||||||||    
T  1275527 atgaagcaacatgatcaagaaaatatgagtgtttgttcaaggtgcgtggatatgt 1275473  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 4510201 - 4510255
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    |||||||||| ||||||||||||| ||  ||||||||||||||  ||||||||||    
T  4510201 atgaagcaacgagatcaagaaaatatgagtgtttgttcaaggtgcgtggatatgt 4510255  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 8117369 - 8117307
Alignment:
Q  110 catctttatcttttcatgtatcttggcttgaaaagaattgagccgtgtccacttcgttgtcac 172  Q
    ||||||||||||| ||||| | | | ||||||||||| ||||  |||||||||||||||||||    
T  8117369 catctttatctttccatgtttatcgacttgaaaagaaatgagttgtgtccacttcgttgtcac 8117307  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 32426536 - 32426590
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatatgt 58  Q
    ||||||||||  ||||||| |||||||| ||||||||||||||  ||||||||||    
T  32426536 atgaagcaacgggatcaaggaaatgtgggtgtttgttcaaggtgcgtggatatgt 32426590  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 4120929 - 4120877
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggtatgtggatat 56  Q
    ||||||||||  || ||||||||||||| ||||||||||||||  ||||||||    
T  4120929 atgaagcaacgggaacaagaaaatgtgggtgtttgttcaaggtgcgtggatat 4120877  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 9556917 - 9556877
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaag 44  Q
    |||||||||| ||||||||||||| ||| ||||||||||||    
T  9556917 atgaagcaacgagatcaagaaaatttgggtgtttgttcaag 9556877  T

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Target: scaffold0325 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 3761 - 3803
Alignment:
Q  4 atgaagcaacaagatcaagaaaatgtggctgtttgttcaaggt 46  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  3761 atgaagcaacgagatcaagaaaatgtggatgtttgttcaaggt 3803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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