View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_low_19 (Length: 298)
Name: NF19536_low_19
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 475243 - 475061
Alignment:
| Q |
43 |
atcatggaaaatatgggcatactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgac |
142 |
Q |
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| T |
475243 |
atcatggaaaatatgggcatactgcatataaagcgcaaccaaattgaagtagagaattaattttccatgcattaaggtctggctctaagaatagtgtgac |
475144 |
T |
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| Q |
143 |
taatgctgattgtaatgttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
225 |
Q |
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| T |
475143 |
taatgctgattgtaatgttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
475061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 468682 - 468517
Alignment:
| Q |
60 |
catactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatg |
159 |
Q |
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| T |
468682 |
catacagcatataaagcgctaccaaattgaagcagagacttaatcttccatccattaaagtctggctctaagaatagtgtgactaatgctgattgtaatg |
468583 |
T |
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| Q |
160 |
ttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
225 |
Q |
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| T |
468582 |
ttgccatgaaacacatccatgcacaaagtgataagtaattgggatgacttgcataagctggaacct |
468517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 457556 - 457392
Alignment:
| Q |
61 |
atactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatgt |
160 |
Q |
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| T |
457556 |
atactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggctccaagaataacgtcagtattgatgattgtaatgt |
457457 |
T |
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| Q |
161 |
tgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
225 |
Q |
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| T |
457456 |
tgaaattaaacacatccaagctgacaatgatatataattaggatggcttgcgtaagctggaacct |
457392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 449286 - 449121
Alignment:
| Q |
60 |
catactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatg |
159 |
Q |
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| T |
449286 |
catactgcatataaagtgcaaccgagttgaactagagatttaatcttccatgcattcaagtttggctcaaagaatagtgccactattgatgattgtaatg |
449187 |
T |
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| Q |
160 |
ttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
225 |
Q |
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| T |
449186 |
ttgacattatacacatccaggctgacaatgataaataattaggatggcttgcgtaagatggaacct |
449121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 480689 - 480524
Alignment:
| Q |
60 |
catactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatg |
159 |
Q |
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| T |
480689 |
catactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatg |
480590 |
T |
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| Q |
160 |
ttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
225 |
Q |
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| T |
480589 |
tagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacct |
480524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 475046 - 475006
Alignment:
| Q |
246 |
tataagaggggtcaggttacatgactattgaagaatatata |
286 |
Q |
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| T |
475046 |
tataagaggggtcaggttacatgactattgaagaatatata |
475006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 27490045 - 27490210
Alignment:
| Q |
60 |
catactgcatataaagcgcaaccaaattgaagtagagaattaatcttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatg |
159 |
Q |
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| T |
27490045 |
catactgaatataaaatgcaaccaaattgaagtagagaagtaatcttccacgcatttagatctgcctccatgaatagtgtcactagtgatgattgtaatg |
27490144 |
T |
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| Q |
160 |
ttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacct |
225 |
Q |
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| T |
27490145 |
ttgccattaaacacatccaggctgaaagagataaggtatttggatggcttgcatatgctggaacct |
27490210 |
T |
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