View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19536_low_22 (Length: 271)

Name: NF19536_low_22
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19536_low_22
NF19536_low_22
[»] chr2 (4 HSPs)
chr2 (16-252)||(36241306-36241542)
chr2 (132-232)||(40054543-40054643)
chr2 (135-232)||(6457536-6457633)
chr2 (130-200)||(6452397-6452466)
[»] chr1 (6 HSPs)
chr1 (133-252)||(30209682-30209801)
chr1 (136-231)||(26793696-26793791)
chr1 (142-234)||(42472071-42472163)
chr1 (142-230)||(12855317-12855405)
chr1 (169-232)||(4593714-4593777)
chr1 (141-232)||(49236111-49236202)
[»] chr3 (4 HSPs)
chr3 (137-232)||(39795319-39795414)
chr3 (132-234)||(45818680-45818782)
chr3 (135-232)||(40416886-40416983)
chr3 (132-189)||(43544852-43544909)
[»] chr4 (6 HSPs)
chr4 (174-244)||(35074377-35074447)
chr4 (141-189)||(29539098-29539146)
chr4 (132-189)||(34666340-34666397)
chr4 (141-190)||(26635550-26635599)
chr4 (142-190)||(19181535-19181583)
chr4 (142-186)||(24155113-24155157)
[»] chr5 (4 HSPs)
chr5 (143-190)||(15416348-15416395)
chr5 (142-214)||(7010730-7010802)
chr5 (137-188)||(32529502-32529553)
chr5 (143-232)||(34731215-34731304)
[»] chr8 (4 HSPs)
chr8 (146-190)||(39283656-39283700)
chr8 (142-221)||(26543876-26543955)
chr8 (155-232)||(3346396-3346473)
chr8 (162-214)||(12595873-12595925)
[»] chr7 (4 HSPs)
chr7 (169-220)||(39594607-39594658)
chr7 (142-231)||(39644849-39644938)
chr7 (142-234)||(7667383-7667475)
chr7 (142-186)||(41482546-41482590)
[»] chr6 (1 HSPs)
chr6 (142-190)||(14227996-14228044)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 36241306 - 36241542
Alignment:
Q  16 atcatgttgaaatctgtctaaattctagacaactccttcgcaacttgcacttaaactaccatgaatcatgctaatttaatttggatttgatatttgtttt 115  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||    
T  36241306 atcatgttgaaatctgtctaaattccagataactccttcgcaacttgcacttaaactaccatgaataatgctaatttaatttgggcttgatatttgtttt 36241405  T
Q  116 tgccacttttcaaacttttagggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaa 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||    
T  36241406 tgccacttttcaaacttttagggttcgtttggtgcacatgataagaagacagaatatgataaaattatcatatctcacttaaatcatttgtttggtacaa 36241505  T
Q  216 caatagaaaatgataaaatgatctcattgcttatcct 252  Q
     |||||||||||||||||| |||||||||||||||||    
T  36241506 taatagaaaatgataaaataatctcattgcttatcct 36241542  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 40054643 - 40054543
Alignment:
Q  132 tttagggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataa 231  Q
    ||||||| | ||||| ||| ||||||||  |||||| ||||||||| | ||| |||||| | |||||||  |||||||||||| ||||||||||||||||    
T  40054643 tttaggggtcgtttgatgcgcatgataacgagacatgatatgataacactattatatcctatttaaatctcttgtttggtgcaccaatagaaaatgataa 40054544  T
Q  232 a 232  Q
    |    
T  40054543 a 40054543  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 6457536 - 6457633
Alignment:
Q  135 agggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaa 232  Q
    ||||| ||||||||||||||||||   |||||  |||||||| || |||||||||    || ||||  |||||||||||| |||||||||||||||||    
T  6457536 agggtatgtttggtgcacatgatagagagacaggatatgatagaactatcatatcatgattcaatctgttgtttggtgcaccaatagaaaatgataaa 6457633  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 6452397 - 6452466
Alignment:
Q  130 cttttagggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatc 200  Q
    |||||| |||||||||||||| |||||| || |||||  |||||||||||||||| ||||| | |||||||    
T  6452397 cttttacggtttgtttggtgcgcatgat-aggagacaggatatgataaaattatcctatccaatttaaatc 6452466  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 30209682 - 30209801
Alignment:
Q  133 ttagggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaa 232  Q
    |||||||  |||||||||||||||||||||| ||   ||||||||||||||||||||| |||||||||  ||||||||| || |||||||||||||||||    
T  30209682 ttagggtccgtttggtgcacatgataagaagtcagggtatgataaaattatcatatcctacttaaatctgttgtttggtacaccaatagaaaatgataaa 30209781  T
Q  233 atgatctcattgcttatcct 252  Q
    || |||||||| ||||||||    
T  30209782 ataatctcattacttatcct 30209801  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 26793696 - 26793791
Alignment:
Q  136 gggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataa 231  Q
    |||| ||||||||||||||||||||||||||| |||||||| || ||||||||||   || ||||  |||||||||||| |||||||||| |||||    
T  26793696 gggtctgtttggtgcacatgataagaagacatgatatgatagaactatcatatcctgattcaatccgttgtttggtgcaccaatagaaaaggataa 26793791  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 42472163 - 42472071
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaaat 234  Q
    ||||||||| || |||||||||||| |||||||||| | | |||||||| |||||||||  |||||||||||| || ||| ||||||||||||    
T  42472163 gtttggtgcgcaggataagaagacagaatatgataacactgtcatatcctacttaaatccgttgtttggtgcatcagtaggaaatgataaaat 42472071  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 12855405 - 12855317
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgata 230  Q
    ||||||||||||||||||| |||||  ||||||||  |||||||||||| | |||||||  ||||||| |||| |||||| ||| ||||    
T  12855405 gtttggtgcacatgataaggagacaggatatgatatcattatcatatcctatttaaatccattgtttgatgcaccaataggaaaggata 12855317  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 4593714 - 4593777
Alignment:
Q  169 atatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaa 232  Q
    ||||||||| | |||||||| | |||||||||  ||||||| |||| |||||||||||||||||    
T  4593714 atatgataacactatcatattctacttaaatctcttgtttgatgcaccaatagaaaatgataaa 4593777  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 49236111 - 49236202
Alignment:
Q  141 tgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaa 232  Q
    |||||||||| || |||||  |||||  |||||||| |||||||||||||   | |||||  |||||||||||| |||||||||| ||||||    
T  49236111 tgtttggtgcgcaggataactagacaggatatgatacaattatcatatcctgatgaaatctattgtttggtgcaccaatagaaaaggataaa 49236202  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 39795414 - 39795319
Alignment:
Q  137 ggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaa 232  Q
    |||||||||||||| || ||||   |||||| ||||||||| | |||||||||| ||||||||   |||||||||||| |||||||| ||||||||    
T  39795414 ggtttgtttggtgcgcaggatagagagacatgatatgataacactatcatatcctacttaaatatgttgtttggtgcaccaatagaatatgataaa 39795319  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 45818782 - 45818680
Alignment:
Q  132 tttagggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataa 231  Q
    ||||||||  |||||||||  | ||||||||||||  ||||||||| | |||||||||| |||||||||  |||||||||||| || ||| ||| |||||    
T  45818782 tttagggtccgtttggtgcgaaggataagaagacaggatatgataacactatcatatcctacttaaatccgttgtttggtgcatcagtagcaaaagataa 45818683  T
Q  232 aat 234  Q
    |||    
T  45818682 aat 45818680  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 40416886 - 40416983
Alignment:
Q  135 agggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaa 232  Q
    ||||| ||||| | |||||||||| |||||||  |||||| |||| ||||||||||  ||| ||||  |||||||||||| ||| |||||||||||||    
T  40416886 agggtctgtttagagcacatgataggaagacaggatatgaaaaaactatcatatcctgcttcaatccgttgtttggtgcatcaacagaaaatgataaa 40416983  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 43544852 - 43544909
Alignment:
Q  132 tttagggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatc 189  Q
    ||||||| | ||||||||||||| |||||||||||| |||||||||||| || |||||    
T  43544852 tttaggggtcgtttggtgcacataataagaagacatgatatgataaaatcattatatc 43544909  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 35074377 - 35074447
Alignment:
Q  174 ataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaaatgatctcattg 244  Q
    ||||||||||||||||| ||||||||  ||||||| ||||| ||||| ||||||||||||| ||| |||||    
T  35074377 ataaaattatcatatcctacttaaattctttgttttgtgcaccaataaaaaatgataaaataatcccattg 35074447  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 29539098 - 29539146
Alignment:
Q  141 tgtttggtgcacatgataagaagacataatatgataaaattatcatatc 189  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||||    
T  29539098 tgtttggtgcacatgataggaagacagaatatgataaaactatcatatc 29539146  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 34666340 - 34666397
Alignment:
Q  132 tttagggtttgtttggtgcacatgataagaagacataatatgataaaattatcatatc 189  Q
    ||||||||  |||||||||||| |||||||||||| ||||||||| || |||||||||    
T  34666340 tttagggtccgtttggtgcacaggataagaagacagaatatgatacaactatcatatc 34666397  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 26635599 - 26635550
Alignment:
Q  141 tgtttggtgcacatgataagaagacataatatgataaaattatcatatcc 190  Q
    |||||||||| ||||||||| |||||| ||||||| | ||||||||||||    
T  26635599 tgtttggtgcgcatgataaggagacatgatatgattagattatcatatcc 26635550  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 19181583 - 19181535
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcatatcc 190  Q
    |||||||||||||||||   |||||| |||||||||||||||| |||||    
T  19181583 gtttggtgcacatgatagagagacatgatatgataaaattatcctatcc 19181535  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 24155113 - 24155157
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcat 186  Q
    |||||||||||| |||||||||||| |||||||||| | ||||||    
T  24155113 gtttggtgcacaggataagaagacagaatatgataatactatcat 24155157  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 15416395 - 15416348
Alignment:
Q  143 tttggtgcacatgataagaagacataatatgataaaattatcatatcc 190  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  15416395 tttggtgcacatgataggaagacatgatatgataaaactatcatatcc 15416348  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 7010802 - 7010730
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgca 214  Q
    |||||||||  | |||||| || ||| |||||||||||||||||||||| |||||||||  || |||||||||    
T  7010802 gtttggtgcgtaggataaggaggcattatatgataaaattatcatatcctacttaaatctcttatttggtgca 7010730  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 32529553 - 32529502
Alignment:
Q  137 ggtttgtttggtgcacatgataagaagacataatatgataaaattatcatat 188  Q
    |||| ||||| |||||||||||||||||||  ||||||||||| ||||||||    
T  32529553 ggttcgtttgatgcacatgataagaagacaagatatgataaaactatcatat 32529502  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 34731215 - 34731304
Alignment:
Q  143 tttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaa 232  Q
    |||||||| ||||||||  ||| |  ||||||||| | |||||||||| | |||||||  |||||||||||| |||||| ||| ||||||    
T  34731215 tttggtgcgcatgataaagagataggatatgataacactatcatatcctatttaaatcccttgtttggtgcaccaataggaaaggataaa 34731304  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 39283656 - 39283700
Alignment:
Q  146 ggtgcacatgataagaagacataatatgataaaattatcatatcc 190  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||    
T  39283656 ggtgcacatgataggaagacataataggataaaactatcatatcc 39283700  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 26543876 - 26543955
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatag 221  Q
    ||||||||| || |||| | |||||  |||||||||||||||||||||| ||| ||||   |||||||||||| ||||||    
T  26543876 gtttggtgcgcaggatagggagacaggatatgataaaattatcatatcctactcaaatttcttgtttggtgcaccaatag 26543955  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 3346396 - 3346473
Alignment:
Q  155 gataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaa 232  Q
    ||||| |||| | ||||||||||||||||| ||||| | ||||||   ||||||||||||  ||||||||| ||||||    
T  3346396 gataacaagataaaatatgataaaattatcctatcctaattaaattcattgtttggtgcactaatagaaaaagataaa 3346473  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 12595925 - 12595873
Alignment:
Q  162 agacataatatgataaaattatcatatcccacttaaatcatttgtttggtgca 214  Q
    |||||| |||||||||||||||| |||||   ||||||| |||||||||||||    
T  12595925 agacatgatatgataaaattatcctatcctgtttaaatcttttgtttggtgca 12595873  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 39594607 - 39594658
Alignment:
Q  169 atatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaata 220  Q
    ||||||||||| |||||||||| |||||||||  |||||||||||| |||||    
T  39594607 atatgataaaactatcatatcctacttaaatccgttgtttggtgcaccaata 39594658  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 39644849 - 39644938
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataa 231  Q
    ||||||||||| ||||| |||||||  ||||||||||| |||||||||  | || |||   |||||||||||  |||||||||| |||||    
T  39644849 gtttggtgcacgtgataggaagacaggatatgataaaactatcatatcatatttcaatttgttgtttggtgcgccaatagaaaaggataa 39644938  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 7667383 - 7667475
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcatatcccacttaaatcatttgtttggtgcaacaatagaaaatgataaaat 234  Q
    |||||||||||| |||||||||| || ||||||||| |  || ||| || |||||||    ||||||| |||| |||||||||| ||||||||    
T  7667383 gtttggtgcacaagataagaagatatgatatgataacacaattataacctacttaaaatcgttgtttgatgcatcaatagaaaaggataaaat 7667475  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 41482590 - 41482546
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcat 186  Q
    ||||||||||||||||| |||||||| ||| ||||||| ||||||    
T  41482590 gtttggtgcacatgataggaagacatgataggataaaactatcat 41482546  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 14228044 - 14227996
Alignment:
Q  142 gtttggtgcacatgataagaagacataatatgataaaattatcatatcc 190  Q
    |||||||||| | ||||||||||||| ||||||||||| |||| |||||    
T  14228044 gtttggtgcataggataagaagacatgatatgataaaactatcttatcc 14227996  T

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