View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19536_low_23 (Length: 267)

Name: NF19536_low_23
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19536_low_23
NF19536_low_23
[»] chr5 (8 HSPs)
chr5 (1-259)||(9048534-9048783)
chr5 (77-231)||(38015873-38016028)
chr5 (136-221)||(19910556-19910641)
chr5 (63-129)||(33009849-33009915)
chr5 (97-229)||(7743636-7743768)
chr5 (91-129)||(15301570-15301608)
chr5 (161-231)||(24539656-24539726)
chr5 (179-211)||(14606437-14606469)
[»] chr4 (14 HSPs)
chr4 (79-229)||(42756764-42756915)
chr4 (60-259)||(11560184-11560383)
chr4 (91-231)||(35648518-35648658)
chr4 (178-259)||(48683571-48683652)
chr4 (73-172)||(6560962-6561062)
chr4 (92-259)||(24182413-24182580)
chr4 (63-173)||(285071-285181)
chr4 (97-174)||(36697769-36697846)
chr4 (191-231)||(13909889-13909929)
chr4 (93-172)||(6554542-6554621)
chr4 (76-141)||(37516421-37516487)
chr4 (75-231)||(17675228-17675384)
chr4 (142-231)||(24181718-24181807)
chr4 (63-108)||(39978005-39978050)
[»] chr2 (20 HSPs)
chr2 (73-231)||(3395393-3395552)
chr2 (92-231)||(45054016-45054155)
chr2 (75-231)||(5788814-5788969)
chr2 (94-229)||(6466919-6467054)
chr2 (99-231)||(45662554-45662686)
chr2 (113-231)||(24967973-24968090)
chr2 (97-172)||(6910346-6910421)
chr2 (92-231)||(14872722-14872861)
chr2 (75-221)||(34425543-34425689)
chr2 (99-226)||(45661109-45661236)
chr2 (92-154)||(14869750-14869812)
chr2 (97-175)||(36720848-36720926)
chr2 (62-123)||(40599682-40599744)
chr2 (186-231)||(2336704-2336749)
chr2 (186-231)||(39693934-39693979)
chr2 (91-151)||(19040703-19040763)
chr2 (185-229)||(20444197-20444241)
chr2 (185-221)||(38796885-38796921)
chr2 (185-229)||(39403381-39403425)
chr2 (91-151)||(39839108-39839168)
[»] scaffold0159 (1 HSPs)
scaffold0159 (75-231)||(33187-33342)
[»] scaffold1315 (1 HSPs)
scaffold1315 (113-229)||(1280-1396)
[»] scaffold1293 (1 HSPs)
scaffold1293 (113-229)||(675-791)
[»] scaffold0074 (1 HSPs)
scaffold0074 (73-224)||(30819-30970)
[»] chr6 (9 HSPs)
chr6 (63-226)||(4852778-4852942)
chr6 (63-226)||(11554336-11554500)
chr6 (185-227)||(18089937-18089979)
chr6 (160-230)||(23407521-23407591)
chr6 (99-221)||(31737166-31737288)
chr6 (91-224)||(24175743-24175875)
chr6 (91-151)||(7428505-7428565)
chr6 (75-202)||(21988811-21988939)
chr6 (92-224)||(24397916-24398047)
[»] chr3 (17 HSPs)
chr3 (97-257)||(10975617-10975777)
chr3 (65-231)||(14044259-14044425)
chr3 (113-231)||(39183083-39183200)
chr3 (63-149)||(9611756-9611844)
chr3 (75-231)||(40056505-40056661)
chr3 (91-231)||(20934182-20934322)
chr3 (63-149)||(12743131-12743217)
chr3 (192-231)||(14240517-14240556)
chr3 (92-154)||(37837547-37837609)
chr3 (75-220)||(39187294-39187440)
chr3 (91-232)||(52753013-52753155)
chr3 (142-231)||(6437612-6437701)
chr3 (134-231)||(30171125-30171221)
chr3 (62-106)||(44904843-44904888)
chr3 (185-229)||(50448-50492)
chr3 (91-231)||(431974-432114)
chr3 (91-151)||(42400403-42400463)
[»] scaffold0380 (1 HSPs)
scaffold0380 (136-231)||(14555-14650)
[»] chr8 (18 HSPs)
chr8 (92-231)||(15276761-15276900)
chr8 (92-231)||(15457130-15457269)
chr8 (75-220)||(23686601-23686747)
chr8 (134-231)||(357552-357648)
chr8 (91-164)||(18431571-18431644)
chr8 (185-222)||(35224718-35224755)
chr8 (142-231)||(43216900-43216989)
chr8 (97-233)||(17888052-17888188)
chr8 (75-165)||(30254510-30254601)
chr8 (160-234)||(34803424-34803498)
chr8 (185-227)||(38291864-38291906)
chr8 (145-231)||(45245034-45245119)
chr8 (73-201)||(367210-367339)
chr8 (95-172)||(12157229-12157306)
chr8 (63-108)||(21585703-21585748)
chr8 (134-231)||(23683167-23683263)
chr8 (157-217)||(11970293-11970353)
chr8 (185-229)||(19263301-19263345)
[»] chr7 (12 HSPs)
chr7 (75-169)||(20181327-20181422)
chr7 (93-211)||(42078923-42079043)
chr7 (142-231)||(6190571-6190660)
chr7 (186-231)||(23714893-23714938)
chr7 (97-231)||(6677073-6677207)
chr7 (178-211)||(22562026-22562059)
chr7 (184-221)||(24901904-24901941)
chr7 (92-229)||(43989689-43989825)
chr7 (185-233)||(4119944-4119992)
chr7 (92-152)||(6188770-6188830)
chr7 (92-152)||(6195286-6195346)
chr7 (191-231)||(38788083-38788123)
[»] scaffold1312 (1 HSPs)
scaffold1312 (113-231)||(12-130)
[»] scaffold0216 (1 HSPs)
scaffold0216 (71-172)||(29170-29272)
[»] scaffold0284 (3 HSPs)
scaffold0284 (91-172)||(6427-6508)
scaffold0284 (92-229)||(114-251)
scaffold0284 (92-229)||(8929-9066)
[»] chr1 (12 HSPs)
chr1 (75-231)||(7844560-7844716)
chr1 (75-231)||(43387040-43387197)
chr1 (79-231)||(31089483-31089637)
chr1 (113-220)||(22541927-22542034)
chr1 (92-154)||(16852891-16852953)
chr1 (160-234)||(17001118-17001192)
chr1 (91-229)||(20306676-20306813)
chr1 (142-231)||(16853665-16853754)
chr1 (134-231)||(21469765-21469861)
chr1 (75-231)||(47783135-47783292)
chr1 (91-151)||(40946525-40946585)
chr1 (134-222)||(45919666-45919754)
[»] scaffold1782 (1 HSPs)
scaffold1782 (185-231)||(1319-1365)
[»] scaffold0377 (1 HSPs)
scaffold0377 (77-211)||(12517-12654)
[»] scaffold1743 (1 HSPs)
scaffold1743 (178-229)||(185-236)
[»] scaffold0050 (1 HSPs)
scaffold0050 (193-232)||(10579-10618)
[»] scaffold0114 (1 HSPs)
scaffold0114 (93-182)||(37041-37130)
[»] scaffold0026 (1 HSPs)
scaffold0026 (157-222)||(115499-115566)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 9048534 - 9048783
Alignment:
Q  1 tcatcacccaaccatttttagcatgttgtgcttctgtatgatcttatttgaat--gtctctaaatcacaaatgtaaagagtctcatacttaaggagagat 98  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||||||||||||||||||||    
T  9048534 tcatcagccaacaatttttagcatgttgtgcttctgtatgatcttatttgaatatgtctctaaatcacaaatgcaaagaatctcatacttaaggagagat 9048633  T
Q  99 gttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           || |||||||||||||||| ||||||||||||||    
T  9048634 gttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattg-----------agcaagataattgatatatctaatgccttaagat 9048722  T
Q  199 tttggatgaagatgtggtgtcaatctcacttgtataatttctattcgtcaaatgtgatgat 259  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9048723 tttggatgaagatgtggtgtcaatctcacttgtataatttctcttcgtcaaatgtgatgat 9048783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 38016028 - 38015873
Alignment:
Q  77 agtctcatacttaa-ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataat 175  Q
    |||||||||||| | |||||||||||||||||| |  ||||||||||| |   | || | |||||| ||||||| |||| ||| |||||||| |||| |     
T  38016028 agtctcatacttgatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgac 38015929  T
Q  176 tgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    | |||||| ||||| ||||||||||||| ||||| |||| ||||||||||||||||    
T  38015928 tcatatatctaatgacttaagattttgggtgaagttgtgatgtcaatctcacttgt 38015873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 19910641 - 19910556
Alignment:
Q  136 atgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaa 221  Q
    |||||| |||||||||||||||| |||||||| |||| | | ||||| ||||| |||||||| ||| |||||||||||| ||||||    
T  19910641 atgcaagagtagatattgaacaacatataagtgagatgagtcatatacttaataccttaagactttagatgaagatgtgatgtcaa 19910556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 33009915 - 33009849
Alignment:
Q  63 tcacaaatgtaaagagtctcatacttaaggagagatgttaatgtgttatatgtgagttaaacttcta 129  Q
    ||||||||  ||||||||||| ||||||  |||||||||||||||| || |||||||||||||||||    
T  33009915 tcacaaatacaaagagtctcacacttaaaaagagatgttaatgtgtcatgtgtgagttaaacttcta 33009849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 7743768 - 7743636
Alignment:
Q  97 atgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaag 196  Q
    |||||||||| | |||||||||||||  ||| | ||  ||||||| |||| ||| || | || | ||| |||| || ||  ||||| |||||||| |||     
T  7743768 atgttaatgtttcatatgtgagttaatgttccacattagatgcaagagtatatagtggaaaaaacataggtaacatgatctatatacttaatgccgtaaa 7743669  T
Q  197 attttggatgaagatgtggtgtcaatctcactt 229  Q
    ||||||||| ||||| |||||||||||||||||    
T  7743668 attttggataaagatatggtgtcaatctcactt 7743636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 15301570 - 15301608
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttcta 129  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  15301570 ggagagatgttaacgtgtcatatgtgagttaaacttcta 15301608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 24539656 - 24539726
Alignment:
Q  161 tataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||||||| | | |||||  |||| | |||||| ||||| |||||||||| ||||||||||||||||    
T  24539656 tataagtaagatgactcatatacctaatactttaagactttgggtgaagatgtgttgtcaatctcacttgt 24539726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 14606469 - 14606437
Alignment:
Q  179 tatatttaatgccttaagattttggatgaagat 211  Q
    ||||||||||| |||||||||||||||||||||    
T  14606469 tatatttaatgacttaagattttggatgaagat 14606437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 42756915 - 42756764
Alignment:
Q  79 tctcatacttaagg-agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattg 177  Q
    ||||| |||||||| |||||||||||||||| || ||||||| ||||||||| || |||||||| | || ||||||| ||| |||||||| | || |       
T  42756915 tctcacacttaagggagagatgttaatgtgtcatttgtgagtaaaacttctacattggatgcaagactatatattgagcaacatataagttaaatgacaa 42756816  T
Q  178 atatatttaatgccttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
    |||||  ||| | |||||| ||||||||||||||||||||||||||||||||    
T  42756815 atatacctaaagtcttaaggttttggatgaagatgtggtgtcaatctcactt 42756764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 11560184 - 11560383
Alignment:
Q  60 aaatcacaaatgtaaagagtctcatacttaagg-agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaa 158  Q
    ||||||||||| ||||||||| || |||||||| |||||||||||||||| ||  ||||||||||||| || || |||||||| |||| |||||| ||||    
T  11560184 aaatcacaaatataaagagtcccacacttaagggagagatgttaatgtgtcatgggtgagttaaacttatacattggatgcaagagtatatattg-acaa 11560282  T
Q  159 tatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgtataatttctattcgtcaaatgtgatga 258  Q
    |||||| || |||| |   ||||| || ||| |||||| ||||   ||||||||| || |||||  || || || ||||||| || |||||||| |||||    
T  11560283 tatatacgtgagatgacaaatatacttgatgtcttaaggttttaagtgaagatgtagtttcaataccaattctagaatttctcttagtcaaatgcgatga 11560382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 35648658 - 35648518
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgc 190  Q
    ||||||||||| |||| | || ||||||||||||||||| || | | |||| |||| ||||||| ||| |||||||  |||  |   |||||  ||||||    
T  35648658 ggagagatgtttatgtttcatgtgtgagttaaacttctacattgtaagcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgc 35648559  T
Q  191 cttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||||||   | |||||||||||||||||||||||||    
T  35648558 cttaagattttacgtaaagatgtggtgtcaatctcacttgt 35648518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 48683571 - 48683652
Alignment:
Q  178 atatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgtataatttctattcgtcaaatgtgatgat 259  Q
    |||||| |||||| ||||||||||| |||||||| | || |||||||||||||| |  |||||||| ||||||| |||||||    
T  48683571 atatatctaatgctttaagattttgaatgaagattttgtatcaatctcacttgtttggtttctattagtcaaatttgatgat 48683652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 6560962 - 6561062
Alignment:
Q  73 aaagagtctcatacttaagg-agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaaga 171  Q
    ||||||||||| | |||||| ||||||| |||||| | | |||||||||||| ||| |||| |||| ||||||||||| || ||||| |||||||| |||    
T  6560962 aaagagtctcacagttaagggagagatgctaatgtatcaaatgtgagttaaagttccatattggatacaaaagtagatgttaaacaacatataagtgaga 6561061  T
Q  172 t 172  Q
    |    
T  6561062 t 6561062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 259
Target Start/End: Complemental strand, 24182580 - 24182413
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcc 191  Q
    |||| |||||||||||| || ||| ||||||||||||| || | | ||||||||| |||||||  || ||  | || |||| | | |||||  |||||      
T  24182580 gagatatgttaatgtgtcatgtgtaagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 24182481  T
Q  192 ttaagattttggatgaagatgtggtgtcaatctcacttgtataatttctattcgtcaaatgtgatgat 259  Q
    ||||| |||  | |||||||||||||||||||||||||||   |||||| ||  ||||||||||||||    
T  24182480 ttaaggtttcaggtgaagatgtggtgtcaatctcacttgtcggatttctcttgatcaaatgtgatgat 24182413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 285071 - 285181
Alignment:
Q  63 tcacaaatgtaaagagtctcatacttaaggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatata 162  Q
    ||||||||  ||||| ||||| ||||||  ||||||||||||| || || || ||||||||||||||  | |||||||| ||||||| || ||||| ||     
T  285071 tcacaaatacaaagaatctcacacttaaaaagagatgttaatgcgtcatgtgagagttaaacttctaggttggatgcaagagtagattttaaacaacatg 285170  T
Q  163 taagtaagata 173  Q
    ||||| |||||    
T  285171 taagtgagata 285181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 36697769 - 36697846
Alignment:
Q  97 atgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataa 174  Q
    |||||||||| | | |||||||||||| ||| | || |||||||||||||||| || ||||| |||||||| ||||||    
T  36697769 atgttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgttaaacaacatataagttagataa 36697846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 13909889 - 13909929
Alignment:
Q  191 cttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||||||| ||||||||||||||||||||||| ||||    
T  13909889 cttaagattttgaatgaagatgtggtgtcaatctcatttgt 13909929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 172
Target Start/End: Original strand, 6554542 - 6554621
Alignment:
Q  93 agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagat 172  Q
    |||||||||||||||| |  ||||||||||| |||||||  ||||| || ||||||| ||||| || |||||||| ||||    
T  6554542 agagatgttaatgtgtcaagtgtgagttaaaattctatagtggatggaagagtagattttgaataacatataagtgagat 6554621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 37516487 - 37516421
Alignment:
Q  76 gagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaa 141  Q
    |||||| ||| ||||| ||||||||||||||| | || ||||||||||||||||||||  |||||||    
T  37516487 gagtctaatatttaagagagagatgttaatgtttcatgtgtgagttaaacttctatatttgatgcaa 37516421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 17675384 - 17675228
Alignment:
Q  75 agagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    |||||||||||||| || || ||| ||||| |||| |  ||||| ||||| ||| | || |||||||  | ||||| |||||||| |||||||| | |||    
T  17675384 agagtctcatacttgagagaaagaagttaacgtgtcaagtgtgatttaaagttccacattggatgcattaatagatgttgaacaacatataagtgatata 17675285  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |   ||||| | |||| |||||| ||| || ||||||||||||||||| |||||||||    
T  17675284 acccatatact-aatgacttaaggtttagggtgaagatgtggtgtcaaactcacttgt 17675228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 24181807 - 24181718
Alignment:
Q  142 aagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||| ||||| || |||||||| |||| ||  |||||  |||||| ||||| |||||| ||| ||| |||||||||||||| ||||    
T  24181807 aagtagatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatatggtgtcaatctcagttgt 24181718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 39978005 - 39978050
Alignment:
Q  63 tcacaaatgtaaagagtctcatacttaaggagagatgttaatgtgt 108  Q
    |||||||| |||||||||||| ||||||  ||||||||||||||||    
T  39978005 tcacaaatataaagagtctcacacttaaaaagagatgttaatgtgt 39978050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 3395552 - 3395393
Alignment:
Q  73 aaagagtctcatacttaa-ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaaga 171  Q
    |||||||||||||||||| |||||||||||||||||| |  ||||||||||| |   |  | | |||||| ||||||| ||||  || |||||||| |||    
T  3395552 aaagagtctcatacttaatggagagatgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatagtagatgttgagaaacatataagtgaga 3395453  T
Q  172 taattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    | | | |||||| ||||| ||||||||||||| ||||| |||| ||||||||| ||||||    
T  3395452 tgactcatatatctaatgtcttaagattttgggtgaagttgtgatgtcaatcttacttgt 3395393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 45054155 - 45054016
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcc 191  Q
    |||||| |||||||||  || |||||||||| ||| || ||  || ||||||||| ||||||| ||| |||||||| ||||| |  |||||  | ||| |    
T  45054155 gagagaagttaatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtc 45054056  T
Q  192 ttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  45054055 ttaagattttgaatgaagatgtggtgtcaatctcatttgt 45054016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 5788969 - 5788814
Alignment:
Q  75 agagtctcatacttaagga-gagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    |||||||||||||||| || ||||||||||||||| | |||||||||||| |   | || | |||||| ||||||| |||||||| |||||||| ||||     
T  5788969 agagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatg 5788870  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    | |   |||| ||||| ||||||||||||| ||||| |||| ||||||||| ||||||    
T  5788869 act--catatctaatgtcttaagattttgggtgaagttgtgatgtcaatcttacttgt 5788814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 229
Target Start/End: Original strand, 6466919 - 6467054
Alignment:
Q  94 gagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcctt 193  Q
    |||||| |||||||| || | ||||| ||||||||| || |||| ||| |||| ||||||| ||| |||||| | | || |   |||||  ||||| |||    
T  6466919 gagatgataatgtgtcatttatgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgacaaatataactaatgtctt 6467018  T
Q  194 aagattttggatgaagatgtggtgtcaatctcactt 229  Q
    ||| ||||||||| ||||||||||||||||||||||    
T  6467019 aagtttttggatggagatgtggtgtcaatctcactt 6467054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 45662554 - 45662686
Alignment:
Q  99 gttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagat 198  Q
    |||||||||  || |||||||||| ||| || ||  |||| || |||| ||||||| |||  ||||||||||||     |||||  ||||| ||||||||    
T  45662554 gttaatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacgtaatgtcttaagat 45662653  T
Q  199 tttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||| ||||||||||||||||||||||| ||||    
T  45662654 tttgaatgaagatgtggtgtcaatctcaattgt 45662686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 24967973 - 24968090
Alignment:
Q  113 tgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatg 212  Q
    ||||| ||||| ||| | || |||||||| | ||||| |||||||| |||||||| | ||||   ||||||| |||| |||||| ||| || ||||||||    
T  24967973 tgtgatttaaagttccacattggatgcaataatagatgttgaacaacatataagtgatataacccatatatt-aatgacttaaggtttagggtgaagatg 24968071  T
Q  213 tggtgtcaatctcacttgt 231  Q
    ||||||||| |||||||||    
T  24968072 tggtgtcaaactcacttgt 24968090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 6910346 - 6910421
Alignment:
Q  97 atgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagat 172  Q
    ||||||| ||||||  ||||||||||| |||||||| ||||| |||||| ||| |||||||  | |||||||||||    
T  6910346 atgttaacgtgttaagtgtgagttaaagttctatataggatggaaaagtggattttgaacaccacataagtaagat 6910421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 14872722 - 14872861
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcc 191  Q
    |||| |||||||||||| || ||| ||||||||||||| || ||| ||||||||| |||||||  || ||  | || |||| | | |||||  |||||      
T  14872722 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 14872821  T
Q  192 ttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||   || | |||||||||||||||||||||||||||    
T  14872822 ttaaggagttaggtgaagatgtggtgtcaatctcacttgt 14872861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 34425689 - 34425543
Alignment:
Q  75 agagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    |||||||||||||| || || ||| ||||| |||| |  ||||| ||||| ||| | || |||||||| | ||||| |||||||| |||||||| | |||    
T  34425689 agagtctcatacttgagagaaagaggttaacgtgtcaagtgtgatttaaagttccacattggatgcaataatagatgttgaacaacatataagtgatata 34425590  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtcaa 221  Q
    | | ||||||| |||| ||| || ||| || |||||||||||||||||    
T  34425589 actcatatatt-aatgacttgaggtttagggtgaagatgtggtgtcaa 34425543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 45661109 - 45661236
Alignment:
Q  99 gttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagat 198  Q
    |||||||||  || |||||||||| ||| || ||  ||||||| |||| ||||| | ||| |||||||| ||||     ||||| |||||| ||||||||    
T  45661109 gttaatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagat 45661208  T
Q  199 tttggatgaagatgtggtgtcaatctca 226  Q
    |||| ||||| |||| ||||||||||||    
T  45661209 tttgaatgaaaatgtagtgtcaatctca 45661236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 14869750 - 14869812
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattga 154  Q
    |||| |||||||||||| || ||| ||||||||||||| || ||| ||||||||| |||||||    
T  14869750 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattga 14869812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 36720848 - 36720926
Alignment:
Q  97 atgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataat 175  Q
    |||||||||||  ||  ||||||||||||| ||||| |||||||| |||| ||||| || || |||||| |||||||||    
T  36720848 atgttaatgtgacatgcgtgagttaaacttttatattggatgcaagagtatatattaaataacatataaataagataat 36720926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 40599744 - 40599682
Alignment:
Q  62 atcacaaatgtaaagagtctcatacttaagg-agagatgttaatgtgttatatgtgagttaaa 123  Q
    |||||| ||| |||||||||||||||| ||| ||||||||||||||||||  ||| |||||||    
T  40599744 atcacagatgcaaagagtctcatacttgaggaagagatgttaatgtgttaagtgtaagttaaa 40599682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 2336704 - 2336749
Alignment:
Q  186 aatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||||||||||||| | ||||||||||||| | |||||||||    
T  2336704 aatgccttaagattttgggttaagatgtggtgtccaactcacttgt 2336749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 39693934 - 39693979
Alignment:
Q  186 aatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||||||||||||| | ||||||||||||| | |||||||||    
T  39693934 aatgccttaagattttgggttaagatgtggtgtccaactcacttgt 39693979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 19040703 - 19040763
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatat 151  Q
    |||||||||||||||||| |  ||||||||||| || ||||| | |||||| |||||||||    
T  19040703 ggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatat 19040763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 20444197 - 20444241
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
    |||||||||||| ||| |||||||||| ||||||||| |||||||    
T  20444197 taatgccttaaggtttaggatgaagatatggtgtcaaactcactt 20444241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 38796885 - 38796921
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaa 221  Q
    |||||||||||||||||| | ||||||||||||||||    
T  38796885 taatgccttaagattttgaaagaagatgtggtgtcaa 38796921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 39403425 - 39403381
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
    |||||| ||||  ||||||||||| ||||||||||||||||||||    
T  39403425 taatgcattaatgttttggatgaacatgtggtgtcaatctcactt 39403381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 39839168 - 39839108
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatat 151  Q
    |||||||||||||||||| |  ||||||||||| || ||||| | |||||| |||||||||    
T  39839168 ggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatat 39839108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 33342 - 33187
Alignment:
Q  75 agagtctcatacttaagga-gagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    |||||||||||||||| || ||||||||||||||| | |||||||||||| |   | || | |||||| ||||||| |||||||| |||||||| ||||     
T  33342 agagtctcatacttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatg 33243  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    | |   |||| ||||| ||||||||||||| ||||| |||| ||||||||| ||||||    
T  33242 act--catatctaatgtcttaagattttgggtgaagttgtgatgtcaatcttacttgt 33187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 1280 - 1396
Alignment:
Q  113 tgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatg 212  Q
    ||||||| ||||||||| || |||||||| | || ||||||  ||| |||||||| | || |   |||||| ||| | |||||| |||||||||||||||    
T  1280 tgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatg 1379  T
Q  213 tggtgtcaatctcactt 229  Q
    |||||||||||||||||    
T  1380 tggtgtcaatctcactt 1396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 791 - 675
Alignment:
Q  113 tgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatg 212  Q
    ||||||| ||||||||| || |||||||| | || ||||||  ||| |||||||| | || |   |||||| ||| | |||||| |||||||||||||||    
T  791 tgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatg 692  T
Q  213 tggtgtcaatctcactt 229  Q
    |||||||||||||||||    
T  691 tggtgtcaatctcactt 675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 30819 - 30970
Alignment:
Q  73 aaagagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaaga 171  Q
    |||||||| |||||||||| ||||||| ||||||||| || |||||||||| |||||| ||  | ||| | |||| ||||||| ||| |||||| | |||    
T  30819 aaagagtcccatacttaagagagagatattaatgtgtcatgtgtgagttaa-cttctacattaggtgcgatagtatatattgagcaacatataaatgaga 30917  T
Q  172 taattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatct 224  Q
    | | | |||||| ||||| | ||||||||||| |||||| ||| |||||||||    
T  30918 tgactaatatatctaatgtcataagattttgggtgaagaggtgatgtcaatct 30970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 4852778 - 4852942
Alignment:
Q  63 tcacaaatgtaaagagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatat 161  Q
    ||||||||  ||||||||||| | ||||  ||||||||||||||||| || |||||||||| |||||| || |||||||  ||||| | || ||||| ||    
T  4852778 tcacaaatacaaagagtctcaaagttaaaagagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacat 4852877  T
Q  162 ataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctca 226  Q
    || ||| |||| |   || ||   |||| ||||||||||||||| || |||||||||||||||||    
T  4852878 attagtgagatgacccatgtaccgaatgtcttaagattttggatcaaaatgtggtgtcaatctca 4852942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 11554500 - 11554336
Alignment:
Q  63 tcacaaatgtaaagagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatat 161  Q
    ||||||||  ||||||||||| | ||||  ||||||||||||||||| || |||||||||| |||||| || |||||||  ||||| | || ||||| ||    
T  11554500 tcacaaatacaaagagtctcaaagttaaaagagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacat 11554401  T
Q  162 ataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctca 226  Q
    || ||| |||| |   || ||  ||||| |||||| |||||| | || |||||||||||||||||    
T  11554400 attagtgagatgacccatgtacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctca 11554336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 18089979 - 18089937
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaatctcac 227  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  18089979 taatgccttaaggttttgggtgaagatgtggtgtcaatctcac 18089937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 23407591 - 23407521
Alignment:
Q  160 atataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttg 230  Q
    |||||||| |||| | | |||| |||||||||||||||||||   |||||||| |||||||||||||||||    
T  23407591 atataagtgagatgactcatatgtttaatgccttaagattttatctgaagatgcggtgtcaatctcacttg 23407521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 31737288 - 31737166
Alignment:
Q  99 gttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagat 198  Q
    |||||||||| |  ||||||||||| ||  | || |||||||| ||||||| |||||||| ||| |||| | || ||| |||||  |||| | |||||||    
T  31737288 gttaatgtgtcaattgtgagttaaaatttcacattggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacctaatacattaagat 31737189  T
Q  199 tttggatgaagatgtggtgtcaa 221  Q
    || |  |||||||||||||||||    
T  31737188 ttagtgtgaagatgtggtgtcaa 31737166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 24175743 - 24175875
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgc 190  Q
    |||||||||||||||||| ||  || ||||  |||| ||||| |||||||| |||| ||||||| ||| |||||| | |||||||  ||||   ||||      
T  24175743 ggagagatgttaatgtgtcatgcgttagtt-tacttttatattggatgcaagagtatatattgagcaacatataaatgagataatcaatatgcataatat 24175841  T
Q  191 cttaagattttggatgaagatgtggtgtcaatct 224  Q
    ||||||||||||| |  | |||||||||||||||    
T  24175842 cttaagattttgggtacatatgtggtgtcaatct 24175875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 7428565 - 7428505
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatat 151  Q
    |||||||||||||||||| |  ||||||||||| || ||||| | |||||| |||||||||    
T  7428565 ggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatat 7428505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 21988811 - 21988939
Alignment:
Q  75 agagtctcatacttaagg-agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    ||||| ||| |||||||| ||| |||||||| ||| |  ||||||||||| |||||  | | ||||||||||| || |||||||| |||||| | ||||     
T  21988811 agagtatcacacttaagggagatatgttaatatgtcaagtgtgagttaaagttctaacttgaatgcaaaagtatatgttgaacaaaatataaatgagatg 21988910  T
Q  174 attgatatatttaatgccttaagattttg 202  Q
    | |||||||| | ||| |||||| |||||    
T  21988911 actgatatatctgatgacttaaggttttg 21988939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 24397916 - 24398047
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcc 191  Q
    ||||||| ||||||||| || |||||||||| |||||| ||  || | |  |||| ||||||| ||| |||||| | |||| | | |||||| ||||| |    
T  24397916 gagagatattaatgtgtcatgtgtgagttaa-cttctacattagacgaattagtatatattgagcaacatataaatgagatgactaatatatctaatgtc 24398014  T
Q  192 ttaagattttggatgaagatgtggtgtcaatct 224  Q
     ||||||||||| |||||| ||| |||||||||    
T  24398015 gtaagattttgggtgaagaggtgatgtcaatct 24398047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 257
Target Start/End: Complemental strand, 10975777 - 10975617
Alignment:
Q  97 atgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaag 196  Q
    ||||| |||||| || |||||||||||||||||||| || ||||| |||| |||||||  || |||||||  ||||||   ||| || ||||| ||||||    
T  10975777 atgtttatgtgtcatgtgtgagttaaacttctatattggctgcaatagtatatattgagtaacatataagcgagataaaaaatacatataatgtcttaag 10975678  T
Q  197 attttggatgaagatgtggtgtcaatctcacttgtataatttctattcgtcaaatgtgatg 257  Q
    ||||| |  |||||   |||||||||||||||||||   ||||| || ||||||| |||||    
T  10975677 attttaggcgaagacacggtgtcaatctcacttgtagggtttctcttagtcaaatatgatg 10975617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 231
Target Start/End: Original strand, 14044259 - 14044425
Alignment:
Q  65 acaaatgtaaagagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatat 163  Q
    ||||||| ||| |||||||||||| || || |||||||||||||| |  ||||| ||||| ||| |||| |||||||| |||| || |||||||| || |    
T  14044259 acaaatgcaaaaagtctcatacttgagagaaagatgttaatgtgtcaagtgtgatttaaagttccatattggatgcaatagtaaatgttgaacaacattt 14044358  T
Q  164 aagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||| | || |   ||||| |||||| |||||| |||  |||||| |||||||||||| |||||||||    
T  14044359 aagtgatatgacccatata-ttaatgacttaaggtttaagatgaatatgtggtgtcaaactcacttgt 14044425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 39183083 - 39183200
Alignment:
Q  113 tgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatg 212  Q
    ||||| ||||| |||||||| |||||||| | ||||| |||||||| |||||||| | ||||   ||||||| |||| |||||| ||| || ||||||||    
T  39183083 tgtgatttaaagttctatattggatgcaataatagatgttgaacaacatataagtgatataacccatatatt-aatgacttaaggtttagggtgaagatg 39183181  T
Q  213 tggtgtcaatctcacttgt 231  Q
    ||||| ||| |||||||||    
T  39183182 tggtgccaaactcacttgt 39183200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 9611844 - 9611756
Alignment:
Q  63 tcacaaatgtaaagagtctcatacttaaggagaga--tgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagat 149  Q
    ||||||||  ||||||||||||||||||| |||||  ||||||||||| || ||||| |||||||||||  | |||||||| |||||||    
T  9611844 tcacaaatacaaagagtctcatacttaagaagagatgtgttaatgtgtcatgtgtgatttaaacttctacgttggatgcaatagtagat 9611756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 40056505 - 40056661
Alignment:
Q  75 agagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    |||||||||||||| || || ||||||||| |||| |  ||||| ||||| ||| | || |||||||| | ||||| |||||||| |||||||| | |||    
T  40056505 agagtctcatacttgagagaaagatgttaacgtgtcaagtgtgatttaaagttccacattggatgcaataatagatgttgaacaacatataagtgatata 40056604  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |   ||||||| |||| |||||| |||  | ||||||||||||||||| |||||||||    
T  40056605 acccatatatt-aatgacttaaggtttatggtgaagatgtggtgtcaaactcacttgt 40056661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 20934322 - 20934182
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgc 190  Q
    ||||||||||| |||| | || ||||| ||||||||||| || | |||||| | || ||||||| ||| |||||||  |||  |   |||||  ||||||    
T  20934322 ggagagatgtttatgtttcatgtgtgacttaaacttctacattgtatgcaataatatatattgagcaacatataagcgagaagaacaatatacctaatgc 20934223  T
Q  191 cttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||||||   |||| ||||||||||||||||||||||    
T  20934222 cttaagattttacgtgaatatgtggtgtcaatctcacttgt 20934182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 12743217 - 12743131
Alignment:
Q  63 tcacaaatgtaaagagtctcatacttaaggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagat 149  Q
    ||||||||  |||| |||||| ||||||  |||||||||||||||| || || ||||||||||||||  | |||||||| |||||||    
T  12743217 tcacaaatacaaagtgtctcacacttaaaaagagatgttaatgtgtcatgtgagagttaaacttctaggttggatgcaagagtagat 12743131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 14240556 - 14240517
Alignment:
Q  192 ttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  14240556 ttaagattttgaatgaagatgtggtgtcaatctcatttgt 14240517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 37837609 - 37837547
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattga 154  Q
    |||| ||||||||||||||| ||||| |||||||| ||  | ||||| |||||||||||||||    
T  37837609 gagatatgttaatgtgttatgtgtgatttaaacttatacgttggatgaaaaagtagatattga 37837547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 39187294 - 39187440
Alignment:
Q  75 agagtctcatacttaagg-agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    ||||||||| |||||||| |||||| ||||| ||| |  ||||||||||| |||||| |   |||||||||||  | |||||||| |||||| | ||||     
T  39187294 agagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttctatgttaaatgcaaaagtatgtgttgaacaaaatataaatgagatg 39187393  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtca 220  Q
    | |||||||| | ||| |||||| |||||| | || |||| ||||||    
T  39187394 actgatatatctgatgacttaaggttttggttcaacatgtagtgtca 39187440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 52753013 - 52753155
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgc 190  Q
    |||||||||||||||| |||| | ||||||||| || || || | ||| || |||| ||||||||||| ||||||||  ||  | | ||| || |||||     
T  52753013 ggagagatgttaatgtattatgtatgagttaaaattataaattgaatgaaatagtatatattgaacaacatataagtgcgaagactaatacatctaatgt 52753112  T
Q  191 cttaagattttgg-atgaagatgtggtgtcaatctcacttgta 232  Q
    |||||  |||||| || ||||| |||||||||||| |||||||    
T  52753113 cttaatcttttggaataaagatatggtgtcaatctaacttgta 52753155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 6437612 - 6437701
Alignment:
Q  142 aagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||| ||||| || |||||||| |||| ||  |||||  |||||| ||||| |||||  ||| |||||||||||||||||| ||||    
T  6437612 aagtagatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgagtgatgatgtggtgtcaatctcagttgt 6437701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 30171221 - 30171125
Alignment:
Q  134 ggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||| |||| || ||||||||||||||||| | || | | ||||| |||||| |||||| |||  |||| ||||||||| |||| |||||||||    
T  30171221 ggatgcaatagtaaatgttgaacaatatataagtgatatgactcatata-ttaatgacttaaggtttaagatggagatgtggtttcaaactcacttgt 30171125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 44904843 - 44904888
Alignment:
Q  62 atcacaaatgtaaagagtctcatacttaagg-agagatgttaatgt 106  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||    
T  44904843 atcacaaatgcaaagagtctcatacttgaggaagagatgttaatgt 44904888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 50448 - 50492
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||||||    
T  50448 taatgtcttaaggtttgggatggagatgtggtgtcaatctcactt 50492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 431974 - 432114
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgc 190  Q
    |||||||| ||||||||| |  ||||||||||| ||| | || |||||||| |||| || ||||  || |||| || ||||| ||  |||||  ||||||    
T  431974 ggagagatattaatgtgtcaattgtgagttaaaattcgacattggatgcaagagtatatgttgagaaacatatgaggaagattatccatataactaatgc 432073  T
Q  191 cttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
     ||| || ||||| |||||| ||| |||| |||||||||||    
T  432074 tttaggactttgggtgaagaagtgatgtcgatctcacttgt 432114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 42400463 - 42400403
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatat 151  Q
    |||||||||||||||||| |  ||||||||||| || ||||| | |||||| |||||||||    
T  42400463 ggagagatgttaatgtgtcacgtgtgagttaaaattttatattgtatgcaatagtagatat 42400403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 14555 - 14650
Alignment:
Q  136 atgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||| ||||||| |||||||| |||||| | |||| | | | |||||||||| ||||||||||||| ||||| |||| ||||||||||| ||||    
T  14555 atgcaatagtagatgttgaacaacatataaatgagatgactcacatatttaatgtcttaagattttgggtgaagttgtgatgtcaatctcatttgt 14650  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 15276900 - 15276761
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcc 191  Q
    |||| |||||||||||| || ||| ||||||||||||| || ||| ||||||||| |||||||  || ||  | || |||| | | |||||  |||||      
T  15276900 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15276801  T
Q  192 ttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    ||||| |||| | |||||||||||||||||||||||||||    
T  15276800 ttaaggttttaggtgaagatgtggtgtcaatctcacttgt 15276761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 15457269 - 15457130
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcc 191  Q
    |||| |||||||||||| || ||| ||||||||||||| || ||| ||||||||| |||||||  || ||  | || |||| | | |||||  |||||      
T  15457269 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15457170  T
Q  192 ttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    ||||| |||| | |||||||||||||||||||||||||||    
T  15457169 ttaaggttttaggtgaagatgtggtgtcaatctcacttgt 15457130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 220
Target Start/End: Original strand, 23686601 - 23686747
Alignment:
Q  75 agagtctcatacttaagg-agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    ||||| ||| |||||||| |||||||||||| ||| |  ||||||||||| |||||  | | ||||||||||| || |||||||| |||||| | ||||     
T  23686601 agagtatcacacttaagggagagatgttaatatgtcaagtgtgagttaaagttctaacttgaatgcaaaagtatatgttgaacaaaatataaatgagatg 23686700  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtca 220  Q
    | |||||||| | ||| |||||| |||||| | || |||| ||||||    
T  23686701 actgatatatctgatgacttaaggttttgggtcaatatgtagtgtca 23686747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 357552 - 357648
Alignment:
Q  134 ggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||| |||| || ||||||||||||||||| | || | | ||||||| |||| |||||| |||  |||||||||||||| |||| |||||||||    
T  357552 ggatgcaatagtaaatgttgaacaatatataagtgatatgactcatatatt-aatgacttaaggtttaagatgaagatgtggtttcaaactcacttgt 357648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 18431644 - 18431571
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatata 164  Q
    |||||||||||||||||| || |||||||||||||||||  |  ||||||| |||| ||||||| ||| |||||    
T  18431644 ggagagatgttaatgtgtcatgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatata 18431571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 35224755 - 35224718
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaat 222  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  35224755 taatgccttaagattttgggtgaagatgtggtgtcaat 35224718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 43216989 - 43216900
Alignment:
Q  142 aagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||| ||||| || |||||||| |||| ||  |||||  |||||| |||||||||||| ||| ||||||||| |||||||| ||||    
T  43216989 aagtagatcttgaaaaacatataagtgagatgatcaatatacataatgctttaagattttgggtgatgatgtggtgacaatctcagttgt 43216900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 233
Target Start/End: Original strand, 17888052 - 17888188
Alignment:
Q  97 atgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaag 196  Q
    |||||||||||| | |||||||||||  || || |  ||||| || ||||||| |||||||| |||||||| |||| |  || |||  ||||| ||||||    
T  17888052 atgttaatgtgtcaaatgtgagttaacattatacactggatggaagagtagattttgaacaacatataagtgagatgaccgaaatacataatgtcttaag 17888151  T
Q  197 attttggatgaagatgtggtgtcaatctcacttgtat 233  Q
     ||||   | ||||||||||||||| |||||||||||    
T  17888152 gttttatgtaaagatgtggtgtcaaactcacttgtat 17888188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 30254510 - 30254601
Alignment:
Q  75 agagtctcatacttaa-ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataa 165  Q
    |||||||||||||||| ||| |||||||||||||| | |||||||||||| ||| | |   |||||||| ||| || |||||||| ||||||    
T  30254510 agagtctcatacttaacggaaagatgttaatgtgtcaaatgtgagttaaaattcgacaatagatgcaaacgtatatgttgaacaacatataa 30254601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 34803424 - 34803498
Alignment:
Q  160 atataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgtata 234  Q
    |||||||| |||| | | |||| | |||||||||||| ||||   |||||||| |||||||||||||||||||||    
T  34803424 atataagtgagatgactcatatgtctaatgccttaaggttttatctgaagatgcggtgtcaatctcacttgtata 34803498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 38291864 - 38291906
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaatctcac 227  Q
    ||||| |||||| |||||||||||||||| |||||||||||||    
T  38291864 taatgtcttaaggttttggatgaagatgtcgtgtcaatctcac 38291906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 45245034 - 45245119
Alignment:
Q  145 tagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    ||||| |||||||| |||||||| | |||| | ||||||| |||| |||||| |||  | ||||||||||||||||| |||||||||    
T  45245034 tagatgttgaacaacatataagtgatataactcatatatt-aatgacttaaggtttaaggtgaagatgtggtgtcaaactcacttgt 45245119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 367210 - 367339
Alignment:
Q  73 aaagagtctcatacttaagg-agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaaga 171  Q
    ||||||| ||| |||||||| ||| |||||||| ||| |  ||||||||||| |||||  | | ||||||||||| || |||||||| |||||| | |||    
T  367210 aaagagtatcacacttaagggagatatgttaatatgtcaagtgtgagttaaagttctaacttgaatgcaaaagtatatgttgaacaaaatataaatgaga 367309  T
Q  172 taattgatatatttaatgccttaagatttt 201  Q
    | | |||||||| | ||| |||||| ||||    
T  367310 tgactgatatatctgatgacttaaggtttt 367339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 12157229 - 12157306
Alignment:
Q  95 agatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagat 172  Q
    |||| ||||||||| |  ||||||||||| || ||||| ||||| |||||| ||| |||||||  |||||||||||||    
T  12157229 agatattaatgtgtcaattgtgagttaaagttttatataggatggaaaagtggattttgaacaccatataagtaagat 12157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 21585748 - 21585703
Alignment:
Q  63 tcacaaatgtaaagagtctcatacttaaggagagatgttaatgtgt 108  Q
    |||||||| |||||||||||| ||||||  ||||||||||||||||    
T  21585748 tcacaaatataaagagtctcacacttaaaaagagatgttaatgtgt 21585703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 23683167 - 23683263
Alignment:
Q  134 ggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||| |||| || ||||||||||||||||| | || | | ||||| |||||| |||||| |||  |||| ||||||||| |||| |||||||||    
T  23683167 ggatgcaatagtaaatgttgaacaatatataagtgatatgactcatata-ttaatgacttaaggtttaagatggagatgtggtttcaaactcacttgt 23683263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 11970293 - 11970353
Alignment:
Q  157 aatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtg 217  Q
    |||||||||||||||| ||| ||| | | |||||||| ||||||||| | |||||||||||    
T  11970293 aatatataagtaagatgattcataaactcaatgcctttagattttgggttaagatgtggtg 11970353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 19263345 - 19263301
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
    ||||| |||||| ||| ||||| ||||||||||||||||||||||    
T  19263345 taatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 19263301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 20181327 - 20181422
Alignment:
Q  75 agagtctcatacttaa-ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaa 169  Q
    |||||||||||||||| |||||||||||||||  | | |||||| ||||| |||||||| |||| ||| ||||||||||||| || ||| ||||||    
T  20181327 agagtctcatacttaaaggagagatgttaatgcatcaaatgtgatttaaagttctatattggattcaagagtagatattgaaaaacatacaagtaa 20181422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 42079043 - 42078923
Alignment:
Q  93 agagatgttaatgtgttatatgtgagttaaacttctat--atcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgc 190  Q
    |||||||||||||||| || ||||||||||||||||||  ||  ||||||| |||||||||||| ||| || ||||| |||| ||  |||||| | |||     
T  42079043 agagatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatattgagcaacatgtaagtgagatgatcaatatatcttatgt 42078944  T
Q  191 cttaagattttggatgaagat 211  Q
    ||||||  ||| |||||||||    
T  42078943 cttaagcattttgatgaagat 42078923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 6190571 - 6190660
Alignment:
Q  142 aagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||| ||||| || ||||||||  ||| ||  |||||  |||||| |||||||||||| ||| |||||||||||||||||| ||||    
T  6190571 aagtagatcttgaaaaacatataagtgggattatcaatatacataatgctttaagattttgggtgatgatgtggtgtcaatctcagttgt 6190660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 23714938 - 23714893
Alignment:
Q  186 aatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||    
T  23714938 aatgccttaagattttgggtgaagatgtggtgtccaactcacttgt 23714893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 231
Target Start/End: Complemental strand, 6677207 - 6677073
Alignment:
Q  97 atgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaag 196  Q
    |||||||| |||||  ||||||||||| |||||||| | ||| ||| ||| || |||||||| ||||| || |||| | | |||||   |||| ||||||    
T  6677207 atgttaatttgttaagtgtgagttaaaattctatattgaatgaaaaggtaaattttgaacaacatatatgtgagatgactcatataccaaatgtcttaag 6677108  T
Q  197 attttggatgaagatgtggtgtcaatctcacttgt 231  Q
     |||| |||||||||||| |   ||||||||||||    
T  6677107 gttttagatgaagatgtgatactaatctcacttgt 6677073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 22562026 - 22562059
Alignment:
Q  178 atatatttaatgccttaagattttggatgaagat 211  Q
    |||||| |||||||||||||||||||||||||||    
T  22562026 atatatctaatgccttaagattttggatgaagat 22562059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 24901904 - 24901941
Alignment:
Q  184 ttaatgccttaagattttggatgaagatgtggtgtcaa 221  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  24901904 ttaatggcttaagattttggatgaagatatggtgtcaa 24901941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 43989689 - 43989825
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcc 191  Q
    ||||||||||||||||| |  ||||||||||| || ||||| | |||||| |||||||  |||  || || ||||| |||| ||| |||||  |||||||    
T  43989689 gagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat-gtgagaaacatttaagtgagatgattcatatacataatgcc 43989787  T
Q  192 ttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
    || ||| |||| | ||| ||||| ||| ||||||||||    
T  43989788 ttcagactttgaaagaatatgtgatgttaatctcactt 43989825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 4119992 - 4119944
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaatctcacttgtat 233  Q
    |||||||||| || |||||||||||||||| | ||||||||| ||||||    
T  4119992 taatgccttaggactttggatgaagatgtgatatcaatctcaattgtat 4119944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 6188770 - 6188830
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatatt 152  Q
    |||| |||||||||||| || ||| ||||||||||||| || ||| ||||||||| |||||    
T  6188770 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatatt 6188830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 6195286 - 6195346
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatatt 152  Q
    |||| |||||||||||| || ||| ||||||||||||| || ||| ||||||||| |||||    
T  6195286 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatatt 6195346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 38788123 - 38788083
Alignment:
Q  191 cttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    ||||| |||||| ||||||||||||||||||||||| ||||    
T  38788123 cttaaaattttgaatgaagatgtggtgtcaatctcatttgt 38788083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 12 - 130
Alignment:
Q  113 tgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatg 212  Q
    ||||||||||||||||| || | |||||| |||| ||||||| ||| |||||||  |||  |   |||||  |||||||||||||||||   | ||||||    
T  12 tgtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagattttacgtaaagatg 111  T
Q  213 tggtgtcaatctcacttgt 231  Q
    |||||||||||||||||||    
T  112 tggtgtcaatctcacttgt 130  T

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Target: scaffold0216 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 29272 - 29170
Alignment:
Q  71 gtaaagagtctcatacttaagg-agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaa 169  Q
    ||||||||||||| | |||||| ||| |||||||||| | | |||||||||||| ||| | || |||||||||||||||| || ||||| |||||||| |    
T  29272 gtaaagagtctcacagttaagggagatatgttaatgtatcaaatgtgagttaaagttccacattggatgcaaaagtagatgttaaacaacatataagtga 29173  T
Q  170 gat 172  Q
    |||    
T  29172 gat 29170  T

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Target: scaffold0284 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 6508 - 6427
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagat 172  Q
    |||||| ||||||||| | | |||||||||||| ||| |||| |||||||||| ||||| |||||||| |||||||| ||||    
T  6508 ggagaggtgttaatgtatcaaatgtgagttaaagttccatattggatgcaaaaatagatgttgaacaacatataagtgagat 6427  T

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Target: scaffold0284; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 251 - 114
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcc 191  Q
    |||||| |||||| |||  ||||||||||||| ||  |||| |||||||| ||||| |  | || || |||||||| |||| |   |||||  |||||||    
T  251 gagagaagttaatttgtcgtatgtgagttaaagtttcatattggatgcaagagtaggtggtcaaaaaaatataagtgagatgacacatataactaatgcc 152  T
Q  192 ttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
    ||||  |||||||||| |||||||||| ||| ||||||    
T  151 ttaaatttttggatgatgatgtggtgttaatttcactt 114  T

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Target: scaffold0284; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 9066 - 8929
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgcc 191  Q
    |||||| |||||| |||  ||||||||||||| ||  |||| |||||||| ||||| |  | || || |||||||| |||| |   |||||  |||||||    
T  9066 gagagaagttaatttgtcgtatgtgagttaaagtttcatattggatgcaagagtaggtggtcaaaaaaatataagtgagatgacacatataactaatgcc 8967  T
Q  192 ttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
    ||||  |||||||||| |||||||||| ||| ||||||    
T  8966 ttaaatttttggatgatgatgtggtgttaatttcactt 8929  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 7844716 - 7844560
Alignment:
Q  75 agagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    |||||||||||||| || || ||| ||||| |||| |  ||||| ||||| ||||| || |||||||| | ||||| |||||||| |||||||| | |||    
T  7844716 agagtctcatacttgagagaaagaggttaacgtgtcaattgtgatttaaagttctacattggatgcaataatagatgttgaacaacatataagtgatata 7844617  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |   ||||||| |||| |||||| ||| |  ||||||||||||||||| |||||||||    
T  7844616 acccatatatt-aatgacttaaggtttagagtgaagatgtggtgtcaaactcacttgt 7844560  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 43387197 - 43387040
Alignment:
Q  75 agagtctcatacttaag-gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    |||||||| |||||||  ||||||||||||||||| |  ||||||||||| ||  | || | |||||| ||||||| ||||  || |||||||| | ||     
T  43387197 agagtctcgtacttaacagagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatg 43387098  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    | |  ||||| ||||| ||||||||||||| ||||| |||| ||||||||| ||||||    
T  43387097 actcgtatatctaatgtcttaagattttgggtgaagttgtgatgtcaatcttacttgt 43387040  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 231
Target Start/End: Complemental strand, 31089637 - 31089483
Alignment:
Q  79 tctcatacttaagg-agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattg 177  Q
    ||||| |||||||| ||| |||||||||||| |||||| ||||||| ||||| || ||||| || |||| || |||| ||| |||||||  |||| ||      
T  31089637 tctcacacttaagggagatatgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagcgagatgatca 31089538  T
Q  178 atatatttaatgccttaag-attttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||  ||||| || |||  |||| | ||| |||||||||||||||||||||||    
T  31089537 atatacctaatgtctgaagtttttttggtgaggatgtggtgtcaatctcacttgt 31089483  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 22541927 - 22542034
Alignment:
Q  113 tgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatg 212  Q
    ||||||||||| |||||  | | ||||||||||| || |||||||| |||||| | |||| | |||||||||| ||| |||||| |||||| | || |||    
T  22541927 tgtgagttaaagttctaatttgaatgcaaaagtatatgttgaacaaaatataaatgagatgactgatatatttgatgacttaaggttttgggtcaatatg 22542026  T
Q  213 tggtgtca 220  Q
    | ||||||    
T  22542027 tagtgtca 22542034  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 16852891 - 16852953
Alignment:
Q  92 gagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattga 154  Q
    |||| |||||||||||| || ||| ||||||||||||| || ||| ||||||||| |||||||    
T  16852891 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattga 16852953  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 17001192 - 17001118
Alignment:
Q  160 atataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgtata 234  Q
    |||||||| |||| | | |||| | |||||||||||| ||||   |||||||| |||||||||||||||||||||    
T  17001192 atataagtgagatgactcatatgtctaatgccttaaggttttatctgaagatgcggtgtcaatctcacttgtata 17001118  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 20306813 - 20306676
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgc 190  Q
    |||||||||||||||||| |  ||||||||||| || ||||| | |||||| |||||||| |||  || || ||||| |||| | | |||||  ||||||    
T  20306813 ggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagata-tgagaaacatttaagtgagatgactcatatacataatgc 20306715  T
Q  191 cttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
     || ||| |||| | ||||||||| ||| ||||||||||    
T  20306714 tttcagactttgaacgaagatgtgatgtgaatctcactt 20306676  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 231
Target Start/End: Original strand, 16853665 - 16853754
Alignment:
Q  142 aagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    ||||| || ||||| || |||||||| |||| ||  |||||  |||||| ||||| |||||| ||| |||||||||||||||||| ||||    
T  16853665 aagtaaatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgtcaatctcagttgt 16853754  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 21469861 - 21469765
Alignment:
Q  134 ggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||| |||| || ||||||||||||||||| | || | | || || |||||| |||||| |||  |||||||||||||| |||| |||||||||    
T  21469861 ggatgcaatagtaaatgttgaacaatatataagtgatatgactcatgta-ttaatgacttaaggtttaagatgaagatgtggtttcaaactcacttgt 21469765  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 47783135 - 47783292
Alignment:
Q  75 agagtctcatacttaaggag-agatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    |||||||| || |||||||  |||||||||||||| |  ||||||||||| ||  | || || ||||| ||||  | || ||||| |||||||| | ||     
T  47783135 agagtctcgtatttaaggaatagatgttaatgtgtcaagtgtgagttaaagtttcacattggctgcaagagtaattgtttaacaacatataagtgatatg 47783234  T
Q  174 attgatatatttaatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    | | |||||  |||||||||||| ||| || ||||||||| || ||||||||||||||    
T  47783235 actcatatacataatgccttaaggtttagggtgaagatgtagtctcaatctcacttgt 47783292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 40946525 - 40946585
Alignment:
Q  91 ggagagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatat 151  Q
    |||||||||||||||||| |  ||||||||||| || ||||| | |||||| |||||||||    
T  40946525 ggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatat 40946585  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 45919754 - 45919666
Alignment:
Q  134 ggatgcaaaagtagatattgaacaatatataagtaagataattgatatatttaatgccttaagattttggatgaagatgtggtgtcaat 222  Q
    ||||||||||||| || || |  ||||||||||| |||| || ||||||  |||| |  ||||||||||||||| |||||| |||||||    
T  45919754 ggatgcaaaagtaaatgttaagaaatatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 45919666  T

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Target: scaffold1782 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1782
Description:

Target: scaffold1782; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 1319 - 1365
Alignment:
Q  185 taatgccttaagattttggatgaagatgtggtgtcaatctcacttgt 231  Q
    |||||||||||||||||   |||||||||||||||||||||||||||    
T  1319 taatgccttaagattttacgtgaagatgtggtgtcaatctcacttgt 1365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 211
Target Start/End: Complemental strand, 12654 - 12517
Alignment:
Q  77 agtctcatacttaagga-gagatgttaatgtgttatatgtgagttaaacttctat--atcggatgcaaaagtagatattgaacaatatataagtaagata 173  Q
    ||||||| ||||||||| ||||||||||||||| || ||||||||||| ||||||  ||  ||||||| |||| ||||||| ||| || ||||| ||||     
T  12654 agtctcacacttaaggaagagatgttaatgtgtcatgtgtgagttaaatttctatacattagatgcaagagtaaatattgagcaacatgtaagtgagatg 12555  T
Q  174 attgatatatttaatgccttaagattttggatgaagat 211  Q
    ||  |||||| | ||| ||||||  ||| |||||||||    
T  12554 atcaatatatcttatgtcttaagcattttgatgaagat 12517  T

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Target: scaffold1743 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 236 - 185
Alignment:
Q  178 atatatttaatgccttaagattttggatgaagatgtggtgtcaatctcactt 229  Q
    |||||| ||||| |||||| ||| ||||| ||||||||||||||||||||||    
T  236 atatatctaatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 10618 - 10579
Alignment:
Q  193 taagattttggatgaagatgtggtgtcaatctcacttgta 232  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  10618 taagtttttggatgaagatgtagtgtcaatctcacttgta 10579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 37041 - 37130
Alignment:
Q  93 agagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgaacaatatataagtaagataattgatata 182  Q
    |||||||||||||||| |  ||||||||||| |||||||  ||||  || ||||||| ||||| || |||||||| |||| ||| |||||    
T  37041 agagatgttaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatgattcatata 37130  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 115566 - 115499
Alignment:
Q  157 aatatataagtaagataattgatatatt--taatgccttaagattttggatgaagatgtggtgtcaat 222  Q
    |||||| ||| ||||| ||| |||||||  || ||||||||||||||||||  |||||||||||||||    
T  115566 aatatacaagaaagatgattcatatattcatattgccttaagattttggatagagatgtggtgtcaat 115499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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