View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19536_low_24 (Length: 248)
Name: NF19536_low_24
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_24 |
 | |
|
| [»] scaffold0191 (2 HSPs) |
| | |
|
| [»] scaffold1312 (1 HSPs) |
| | |
|
| [»] scaffold1315 (1 HSPs) |
| | |
|
| [»] scaffold1293 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0191 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 5887 - 6100
Alignment:
| Q |
19 |
atcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887 |
atcagaaatacggattgtctcacacataatagagatatgttgatgtgtcatgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaaca |
5986 |
T |
|
| Q |
116 |
tgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgat |
215 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5987 |
tgaatgtgagatggccaatatacataatgaatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgat |
6086 |
T |
|
| Q |
216 |
caatccattataag |
229 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6087 |
caatccattataag |
6100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 12231 - 12353
Alignment:
| Q |
93 |
gcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggt |
192 |
Q |
| |
|
||||||||| |||||||| ||||| | || ||||| ||||||||| | ||| || ||||||||| ||||||||||||| |||||| ||| |||||| |
|
|
| T |
12231 |
gcaaaagtagatattgagcaacatataagtgagatgtccaatatacctgatgtctta-agattttgaatgaagatgtggtggcaatctcattcgtggggt |
12329 |
T |
|
| Q |
193 |
ttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
||||||| | |||||||||||||| |
|
|
| T |
12330 |
ttctcttagacaaatgtaatgatc |
12353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 28475003 - 28474790
Alignment:
| Q |
19 |
atcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaaca |
115 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28475003 |
atcagaaatatggactgtctcacacataatagagatatgttgatgtgtcatgtgtgagttaaacttctacattgaaagcaaaagtatatattgagataca |
28474904 |
T |
|
| Q |
116 |
tgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgat |
215 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
28474903 |
tgaatgtgagatggctaatatacataatgtctttcaggttttgagtgaagatgtggtgtcaatctcatttttggggtttctcttggtcaaatgtgatgat |
28474804 |
T |
|
| Q |
216 |
caatccattataag |
229 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28474803 |
caatccattataag |
28474790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 24182611 - 24182401
Alignment:
| Q |
19 |
atcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaaca |
115 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24182611 |
atcagaaatacagaatgtctcacacataatagagatatgttaatgtgtcatgtgtaagttaaacttctacattgaaagcaaaagtatatattgagaaaca |
24182512 |
T |
|
| Q |
116 |
tgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgat |
215 |
Q |
| |
|
||||||| ||||| | ||||||||||||| | || || ||| ||||||||||||||||||||| | || | || ||||||||| |||||||| ||||| |
|
|
| T |
24182511 |
tgaatgtgagatgactaatatacataatgta-ttaaggtttcaggtgaagatgtggtgtcaatctcacttgtcggatttctcttgatcaaatgtgatgat |
24182413 |
T |
|
| Q |
216 |
caatccattata |
227 |
Q |
| |
|
||||| |||||| |
|
|
| T |
24182412 |
caatctattata |
24182401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 13909809 - 13909958
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaag |
165 |
Q |
| |
|
|||||||||||| ||| |||||| | |||||| || |||||||| ||||| | || ||||| ||||||||| | ||| || ||||||||| ||||| |
|
|
| T |
13909809 |
tgtgtgagttaaccttttacatttgacgcaaaaataaatattgagcaacatataagtgagatgtccaatatacctgatgtctta-agattttgaatgaag |
13909907 |
T |
|
| Q |
166 |
atgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| | |||||||||||||| |
|
|
| T |
13909908 |
atgtggtgtcaatctcatttgtggggtttctcttagacaaatgtaatgatc |
13909958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 35648638 - 35648588
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacat |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
35648638 |
tgtgtgagttaaacttctacattgtaagcaatagtatatattgagcaacat |
35648588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 24180652 - 24180590
Alignment:
| Q |
154 |
ttttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
|||||| |||| |||| ||||||| || |||||||||||||||||| | ||||||||||||| |
|
|
| T |
24180652 |
ttttgaatgaaaatgtagtgtcaaactcatttttggggtttctcttagataaatgtaatgatc |
24180590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 38 - 231
Target Start/End: Complemental strand, 45058553 - 45058358
Alignment:
| Q |
38 |
tcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaat |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
45058553 |
tcacacataatagagatatgttgatgtgtcatgtgtcggttaaacttctacattggaagcaaaagtatatattgagaaacatgaaagtgagatggccaat |
45058454 |
T |
|
| Q |
135 |
atacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatcaatccattataagtg |
231 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
45058453 |
atacataatgtctttcaggttttgagtgaagatgtgatgtcaatctcatttttggggtttctc-tggtcaaatgtgatgatcaatccattataagtg |
45058358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 14872695 - 14872901
Alignment:
| Q |
23 |
gaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaa |
119 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14872695 |
gaaatacggattgtctcatacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaa |
14872794 |
T |
|
| Q |
120 |
tgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatcaat |
219 |
Q |
| |
|
||| ||||| | ||||||||||||| ||| || || | ||||||||||||||||||||| | || | || ||||||||| ||||||| ||||||||| |
|
|
| T |
14872795 |
tgtgagatgactaatatacataatgtattaaggagttag-gtgaagatgtggtgtcaatctcacttgtcggatttctcttgaacaaatgtgatgatcaat |
14872893 |
T |
|
| Q |
220 |
ccattata |
227 |
Q |
| |
|
| |||||| |
|
|
| T |
14872894 |
ctattata |
14872901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 14869723 - 14869831
Alignment:
| Q |
23 |
gaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaa |
119 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14869723 |
gaaatacggattgtctcatacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaa |
14869822 |
T |
|
| Q |
120 |
tgtaagatg |
128 |
Q |
| |
|
||| ||||| |
|
|
| T |
14869823 |
tgtgagatg |
14869831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 227
Target Start/End: Original strand, 45659128 - 45659320
Alignment:
| Q |
38 |
tcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaat |
134 |
Q |
| |
|
|||||| ||| ||||||||||| |||||| |||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
45659128 |
tcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctaaattggaagcaaaaatatatattgagaaacatgaatgtgagatgactaat |
45659227 |
T |
|
| Q |
135 |
-atacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatcaatccattata |
227 |
Q |
| |
|
|||||||||| | || || |||| ||||||||||||||||||||| || | | || ||||||||| | |||| | |||||||||| |||||| |
|
|
| T |
45659228 |
aatacataatgta-ttaaggttttaggtgaagatgtggtgtcaatctcatatgtcggatttctcttgataaaatatgatgatcaatctattata |
45659320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 45054136 - 45053987
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaag |
165 |
Q |
| |
|
|||||||||||| ||| |||||| | ||||||||| |||||||| ||||| | || |||| |||||||| | ||| || ||||||||| ||||| |
|
|
| T |
45054136 |
tgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtctta-agattttgaatgaag |
45054038 |
T |
|
| Q |
166 |
atgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
||||||||||||||| |||| ||||||||| ||| | |||||||||||||| |
|
|
| T |
45054037 |
atgtggtgtcaatctcatttgtggggtttcacttagacaaatgtaatgatc |
45053987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 45661121 - 45661270
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaag |
165 |
Q |
| |
|
|||||||||||| ||| |||||| | |||| |||| ||||| || ||||| | || ||||| ||||||||| ||||| || ||||||||| |||| |
|
|
| T |
45661121 |
tgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtctta-agattttgaatgaaa |
45661219 |
T |
|
| Q |
166 |
atgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
|||| |||||||||| |||| ||||||||||||| | |||||||||||||| |
|
|
| T |
45661220 |
atgtagtgtcaatctcatttatggggtttctcttagacaaatgtaatgatc |
45661270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 216
Target Start/End: Original strand, 45662566 - 45662714
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaag |
165 |
Q |
| |
|
|||||||||||| ||| |||||| | | || |||| |||||||| ||| | | |||||||| ||||||||| ||||| || ||||||||| ||||| |
|
|
| T |
45662566 |
tgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacgtaatgtctta-agattttgaatgaag |
45662664 |
T |
|
| Q |
166 |
atgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
||||||||||||||| | || | ||||||||||| |||||||||||||| |
|
|
| T |
45662665 |
atgtggtgtcaatctcaattgt-gggtttctcttaaacaaatgtaatgatc |
45662714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 34515210 - 34515047
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaag |
165 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
34515210 |
tgtgtcagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgaccaatatacataatgtctttcaggttttgagtgaag |
34515111 |
T |
|
| Q |
166 |
atgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatcaatccattataag |
229 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34515110 |
atgtgatgtcaatctcatttttggggtttctcttggtcaaatgtggtgatcaatccattataag |
34515047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 6436814 - 6437024
Alignment:
| Q |
19 |
atcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaaca |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||| |||||| || | |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6436814 |
atcagaaatacggattgtctcacacgtaacagagatatgttaatgtgtcatgtctaagttaaacttctacattggaagcaaaagtatatattgagaaaca |
6436913 |
T |
|
| Q |
116 |
tgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgat |
215 |
Q |
| |
|
||||||| ||||| | ||||||||||||| | || || | || |||||||||||| |||||||| | || | || ||||||||| |||||||| ||||| |
|
|
| T |
6436914 |
tgaatgtgagatgactaatatacataatgta-ttaaggtgttaggtgaagatgtggcgtcaatctcacttgtcggatttctcttgatcaaatgtgatgat |
6437012 |
T |
|
| Q |
216 |
caatccattata |
227 |
Q |
| |
|
||||| |||||| |
|
|
| T |
6437013 |
caatctattata |
6437024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 225
Target Start/End: Original strand, 9262737 - 9262947
Alignment:
| Q |
17 |
atatcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||| ||||||| |||||| |||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
9262737 |
atatcagaaatacggattgtctcacacgtaacagaaatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaaatatatattgagaaa |
9262836 |
T |
|
| Q |
114 |
catgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatg |
213 |
Q |
| |
|
||||||||| ||||| | ||||||||||||| | || || |||| ||||||||||| | ||||||| | | | || ||||||||| |||||||| ||| |
|
|
| T |
9262837 |
catgaatgtgagatgactaatatacataatgta-ttaaggttttaggtgaagatgtgctctcaatctcacatgtcggatttctcttgatcaaatgtgatg |
9262935 |
T |
|
| Q |
214 |
atcaatccatta |
225 |
Q |
| |
|
||||||| |||| |
|
|
| T |
9262936 |
atcaatctatta |
9262947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 14240637 - 14240488
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcat-ttcagattttgagtgaa |
164 |
Q |
| |
|
|||||||||||| ||| |||||| | |||||||| || ||||| ||||| |||| ||||| ||||||||| | || || || ||||||||| |||| |
|
|
| T |
14240637 |
tgtgtgagttaaccttttacatttgacccaaaagtaaattttgagcaacatatatgtgagatgtccaatatacctgat--atgttaagattttgaatgaa |
14240540 |
T |
|
| Q |
165 |
gatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| | ||||| |||||||| |
|
|
| T |
14240539 |
gatgtggtgtcaatctcatttgtggggtttctcttagacaaatataatgatc |
14240488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 12125558 - 12125403
Alignment:
| Q |
69 |
gtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtga-agat |
167 |
Q |
| |
|
|||||||| |||||||| || | |||| ||||||||||||| ||||| |||| ||||| ||||||||| ||||| || | |||||| | |||| |
|
|
| T |
12125558 |
gtgagttacacttctacttttgatgcaagagtatatattgagcaacatatatgtgagatgaccaatatacctaatgtcttcatg--tttgagatagagat |
12125461 |
T |
|
| Q |
168 |
gtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgat-caatccatt |
224 |
Q |
| |
|
|||||||| |||| | || |||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
12125460 |
gtggtgtctatcttacttgtggggtttctcttgttcaaatgtgatgatccaatccatt |
12125403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 6437646 - 6437694
Alignment:
| Q |
131 |
caatatacataatgcatttcagattttgagtgaagatgtggtgtcaatct |
180 |
Q |
| |
|
||||||||||||||| ||| || |||||||||| |||||||||||||||| |
|
|
| T |
6437646 |
caatatacataatgc-tttaaggttttgagtgatgatgtggtgtcaatct |
6437694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 9265297 - 9265444
Alignment:
| Q |
68 |
tgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagat |
167 |
Q |
| |
|
|||||||||| ||| |||||| | |||| |||| ||||| || ||||| | || ||||| ||||||||| ||||| || || |||||| |||| | |
|
|
| T |
9265297 |
tgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtctta-aggttttgaatgaaact |
9265395 |
T |
|
| Q |
168 |
gtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
|| |||||||||| |||| | ||||||||||| | |||||||||||||| |
|
|
| T |
9265396 |
gtagtgtcaatctcatttatagggtttctcttagacaaatgtaatgatc |
9265444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 16852858 - 16853070
Alignment:
| Q |
17 |
atatcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16852858 |
atatcagaaatacggattgtctcacaagtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaa |
16852957 |
T |
|
| Q |
114 |
catgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatg |
213 |
Q |
| |
|
||||||||| ||||| | ||||||||||||| | || || |||| || ||||||||||||||||||| | | | || ||||||||| |||||| | | | |
|
|
| T |
16852958 |
catgaatgtgagatgactaatatacataatgta-ttaaggttttaagggaagatgtggtgtcaatctcacatgtcggatttctcttgatcaaatctgacg |
16853056 |
T |
|
| Q |
214 |
atcaatccattata |
227 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
16853057 |
atcaatctattata |
16853070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 6846937 - 6846804
Alignment:
| Q |
56 |
tgttgatgtgtg-tgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagat |
154 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
6846937 |
tgttgatgtgtaatgtgagttaaactt--acattgaaagtaaaagtatatattgagaaacatgaatgtgaaatggccaatataca---------acagat |
6846849 |
T |
|
| Q |
155 |
tttgagtgaagatgtggtgtcaatctaatttttggggtttctcttggt |
202 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
6846848 |
tttgagtgaagat---gtgtcaatctcatttttggggtttctcttggt |
6846804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 27342218 - 27342261
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattga |
109 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
27342218 |
tgtgtgagttaaacttctacattggatgcaatagtatatattga |
27342261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 15276931 - 15276768
Alignment:
| Q |
19 |
atcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaaca |
115 |
Q |
| |
|
|||||||| || |||||||||||| ||| ||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15276931 |
atcagaaacacagattgtctcacatgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaaca |
15276832 |
T |
|
| Q |
116 |
tgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatct |
180 |
Q |
| |
|
||||||| ||||| | ||||||||||||| | || || |||| ||||||||||||||||||||| |
|
|
| T |
15276831 |
tgaatgtgagatgactaatatacataatgta-ttaaggttttaggtgaagatgtggtgtcaatct |
15276768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 15457300 - 15457137
Alignment:
| Q |
19 |
atcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaaca |
115 |
Q |
| |
|
|||||||| || |||||||||||| ||| ||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15457300 |
atcagaaacacagattgtctcacatgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaaca |
15457201 |
T |
|
| Q |
116 |
tgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatct |
180 |
Q |
| |
|
||||||| ||||| | ||||||||||||| | || || |||| ||||||||||||||||||||| |
|
|
| T |
15457200 |
tgaatgtgagatgactaatatacataatgta-ttaaggttttaggtgaagatgtggtgtcaatct |
15457137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 43215615 - 43215466
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaag |
165 |
Q |
| |
|
|||||||||||| ||| |||||| | |||| |||| ||||| || ||||| | || ||||| ||||||||| ||||| || | | |||||| |||| |
|
|
| T |
43215615 |
tgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttacgg-ttttgaatgaaa |
43215517 |
T |
|
| Q |
166 |
atgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
|||| |||||||||| |||| ||||||| ||||| | |||||||||||||| |
|
|
| T |
43215516 |
atgtagtgtcaatctcatttatggggttcctcttagacaaatgtaatgatc |
43215466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 38291341 - 38291393
Alignment:
| Q |
164 |
agatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||||| ||||||||| |||||| |
|
|
| T |
38291341 |
agatgtggtgtcaatcttatttatgggatttctcttagtcaaatgtgatgatc |
38291393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 15275980 - 15275926
Alignment:
| Q |
161 |
tgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||||| | |||||||||||||| |
|
|
| T |
15275980 |
tgaagatgtggtgtcaatctcatttgt-gggtttctcttagacaaatgtaatgatc |
15275926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 15456349 - 15456295
Alignment:
| Q |
161 |
tgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||||| | |||||||||||||| |
|
|
| T |
15456349 |
tgaagatgtggtgtcaatctcatttgt-gggtttctcttagacaaatgtaatgatc |
15456295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 18431624 - 18431475
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtga-a |
164 |
Q |
| |
|
||||||||||||||||||| || | |||| ||||||||||||| ||||| || | ||||| ||||||||| ||||| || ||| ||| ||| | | |
|
|
| T |
18431624 |
tgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatatatttgagatgaccaatatacctaatgtctt-caggttt-gagataga |
18431527 |
T |
|
| Q |
165 |
gatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
||||||||||| |||| | || |||||||||||||| |||||||| |||||| |
|
|
| T |
18431526 |
gatgtggtgtccatcttacttgtggggtttctcttgttcaaatgtgatgatc |
18431475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 6188739 - 6188830
Alignment:
| Q |
19 |
atcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatatt |
107 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6188739 |
atcagaaatactgattgtctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatatt |
6188830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 6195255 - 6195346
Alignment:
| Q |
19 |
atcagaaatacggattgtctcacacataatagagatatgttgatgtgt---gtgtgagttaaacttctacattgaaagcaaaagtatatatt |
107 |
Q |
| |
|
||||||||||| ||||||||||||| ||| ||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6195255 |
atcagaaatactgattgtctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatatt |
6195346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 6189844 - 6189970
Alignment:
| Q |
99 |
gtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaagatgtggtgtcaatctaatttttggggtttctct |
198 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||| |||||| ||| | ||| | ||||||||||||||||||||| || | || ||||||| |
|
|
| T |
6189844 |
gtatatattgagaaacatgaatgtgagatgactaatatatataatgtattaaggctttag-gtgaagatgtggtgtcaatctctcttgtcggatttctct |
6189942 |
T |
|
| Q |
199 |
tggtcaaatgtaatgatcaatccattat |
226 |
Q |
| |
|
|| |||||||| |||||||||| ||||| |
|
|
| T |
6189943 |
tgatcaaatgtgatgatcaatcaattat |
6189970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 38788203 - 38788054
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcatttcagattttgagtgaag |
165 |
Q |
| |
|
|||||||||||| ||| |||||| | ||||||||| |||||||| ||||| | | ||||| ||||||||| | ||| || | ||||||| ||||| |
|
|
| T |
38788203 |
tgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataactgagatgtccaatatacctgatgtcttaaa-attttgaatgaag |
38788105 |
T |
|
| Q |
166 |
atgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgatc |
216 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||||| | |||| ||| ||||| |
|
|
| T |
38788104 |
atgtggtgtcaatctcatttgtggagtttctcttagacaaaagtagtgatc |
38788054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 17510217 - 17510084
Alignment:
| Q |
65 |
gtgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcat-ttcagattttgagtga |
163 |
Q |
| |
|
||||||||||||||||||||| || | |||| |||||||||||| ||||| ||| ||||||||||||||| |||| || ||||| ||| | || |
|
|
| T |
17510217 |
gtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaat--atcttcaggtttcggatgg |
17510120 |
T |
|
| Q |
164 |
agatgtggtgtcaatctaatttttggggtttctctt |
199 |
Q |
| |
|
|||||||||||| |||| | || ||||||||||||| |
|
|
| T |
17510119 |
agatgtggtgtccatcttacttgtggggtttctctt |
17510084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 17542997 - 17543130
Alignment:
| Q |
65 |
gtgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataatgcat-ttcagattttgagtga |
163 |
Q |
| |
|
||||||||||||||||||||| || | |||| |||||||||||| ||||| ||| ||||||||||||||| |||| || ||||| ||| | || |
|
|
| T |
17542997 |
gtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaat--atcttcaggtttcggatgg |
17543094 |
T |
|
| Q |
164 |
agatgtggtgtcaatctaatttttggggtttctctt |
199 |
Q |
| |
|
|||||||||||| |||| | || ||||||||||||| |
|
|
| T |
17543095 |
agatgtggtgtccatcttacttgtggggtttctctt |
17543130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 4110418 - 4110348
Alignment:
| Q |
73 |
gttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtaagatggccaatatacataat |
143 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||||||||| |||||| | || ||||| |||| |||||||| |
|
|
| T |
4110418 |
gttaaactactacattgaatgcaatagtatatattgagcaacatgtaagtgagatgatcaatttacataat |
4110348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 6190605 - 6190653
Alignment:
| Q |
131 |
caatatacataatgcatttcagattttgagtgaagatgtggtgtcaatct |
180 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||| |||||||||||||||| |
|
|
| T |
6190605 |
caatatacataatgc-tttaagattttgggtgatgatgtggtgtcaatct |
6190653 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1312 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1312
Description:
Target: scaffold1312; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 10 - 60
Alignment:
| Q |
66 |
tgtgtgagttaaacttctacattgaaagcaaaagtatatattgagaaacat |
116 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||||||||||| ||||| |
|
|
| T |
10 |
tgtgtgagttaaacttctacattgtatgcaatagtatatattgagcaacat |
60 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1315 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1315
Description:
Target: scaffold1315; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 1372 - 1426
Alignment:
| Q |
161 |
tgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgat |
215 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||| | ||||||| ||||| |
|
|
| T |
1372 |
tgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgatgat |
1426 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1293 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1293
Description:
Target: scaffold1293; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 699 - 645
Alignment:
| Q |
161 |
tgaagatgtggtgtcaatctaatttttggggtttctcttggtcaaatgtaatgat |
215 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||| | ||||||| ||||| |
|
|
| T |
699 |
tgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgatgat |
645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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