View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19536_low_28 (Length: 201)
Name: NF19536_low_28
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_28 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 5251117 - 5250951
Alignment:
| Q |
16 |
gagatgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5251117 |
gagatgaagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
5251018 |
T |
|
| Q |
116 |
atgcaccactgaagaagctgaaagctgaatctcaatcttctactagcaaggtattcgacttcttttc |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5251017 |
atgcaccactgaagaagctgaaagctgaatctcaaccttctactagcaaggtattcgacttcttttc |
5250951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 182
Target Start/End: Complemental strand, 5269005 - 5268838
Alignment:
| Q |
15 |
tgagatgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaact |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269005 |
tgagatgaagcagttccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaact |
5268906 |
T |
|
| Q |
115 |
gatgcaccactgaagaagctgaaagctgaatctcaatcttctactagcaaggtattcgacttcttttc |
182 |
Q |
| |
|
||| ||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||| |||| |
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| T |
5268905 |
gatacaccattgaagaagcagaaacttgaatctcaaccttctactagcaaggtattcgacttcatttc |
5268838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 4388024 - 4388184
Alignment:
| Q |
16 |
gagatgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
115 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4388024 |
gagatgaagcagtaccaaagcatgtccgtgaagaagtggcttgatgatcttaaacataatgcatatgaggttgaccagctgttagatgagattgcaactg |
4388123 |
T |
|
| Q |
116 |
atgcaccactgaagaagctgaaagctgaatctcaatcttctactagcaaggtattcgacttcttttc |
182 |
Q |
| |
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|||||||| ||||||||| || ||| | || |||||||||||||||||||| |||||||||| |
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| T |
4388124 |
atgcaccattgaagaagcaga------aatttgaaccttctactagcaaggtattcaacttcttttc |
4388184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 5299673 - 5299513
Alignment:
| Q |
22 |
aagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcac |
121 |
Q |
| |
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||||| ||||||||| ||||||||||||||||||| ||||||||||||| || ||||| | || || || || |||||||||||||| | ||| |
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| T |
5299673 |
aagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagattgcaacctacacac |
5299574 |
T |
|
| Q |
122 |
cactgaagaagctgaaagctgaatctcaatcttctactagcaaggtattcgacttcttttc |
182 |
Q |
| |
|
|| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5299573 |
caaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttcttttc |
5299513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 6447941 - 6448011
Alignment:
| Q |
94 |
ctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctgaatctcaatcttctactagcaa |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||||||||||||| |
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| T |
6447941 |
ctgttagatgagattgcaactgatgcaccagtgaagaagctgaaggccgaatctcaaccttctactagcaa |
6448011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 5281594 - 5281471
Alignment:
| Q |
24 |
gcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcacca |
123 |
Q |
| |
|
||||||| |||||| || || ||||||||||||||||||||||||||| || |||||||| ||||| | || ||||||||||| ||||| |||| | |
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| T |
5281594 |
gcagtacaaaagcacatatgtaaagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgctactgacgcacaa |
5281495 |
T |
|
| Q |
124 |
ctgaagaagctgaaagctgaatct |
147 |
Q |
| |
|
||||| |||||||||| ||||||| |
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|
| T |
5281494 |
ctgaataagctgaaagatgaatct |
5281471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 6948193 - 6948089
Alignment:
| Q |
43 |
gtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctg |
142 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||||| ||||| ||||||||||||||| | ||||||||| || || ||||||||||||| |
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| T |
6948193 |
gtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatttctactgatgcaatgctaaataagctgaaagctg |
6948094 |
T |
|
| Q |
143 |
aatct |
147 |
Q |
| |
|
||||| |
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|
| T |
6948093 |
aatct |
6948089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 6553516 - 6553620
Alignment:
| Q |
16 |
gagatgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
115 |
Q |
| |
|
||||| ||||||||||||| || || |||||||||||||||||||| ||||||||| || ||||||| ||||| || |||||||||||| | |||| |
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| T |
6553516 |
gagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactg |
6553615 |
T |
|
| Q |
116 |
atgca |
120 |
Q |
| |
|
||||| |
|
|
| T |
6553616 |
atgca |
6553620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 8455605 - 8455501
Alignment:
| Q |
16 |
gagatgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
115 |
Q |
| |
|
||||| ||||||||||||| || || |||||||||||||||||||||||||||||| || ||||| | ||||| || |||||||||||| | |||| |
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|
| T |
8455605 |
gagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatttctactg |
8455506 |
T |
|
| Q |
116 |
atgca |
120 |
Q |
| |
|
||||| |
|
|
| T |
8455505 |
atgca |
8455501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 6479060 - 6479191
Alignment:
| Q |
16 |
gagatgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
115 |
Q |
| |
|
||||| ||||||||||||| ||| || |||||||||||||||||| | ||||||||| || ||||| | ||||| || ||||||||||| | |||| |
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|
| T |
6479060 |
gagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagatatctactg |
6479159 |
T |
|
| Q |
116 |
atgcaccactgaagaagctgaaagctgaatct |
147 |
Q |
| |
|
||||| || || |||||||||||||||||| |
|
|
| T |
6479160 |
atgcaatgctaaataagctgaaagctgaatct |
6479191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 8590680 - 8590549
Alignment:
| Q |
16 |
gagatgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
115 |
Q |
| |
|
||||| |||||||||| ||||| || |||||||||||||||||||| ||||||||| || ||||| | ||||| || |||||||||||| | |||| |
|
|
| T |
8590680 |
gagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactg |
8590581 |
T |
|
| Q |
116 |
atgcaccactgaagaagctgaaagctgaatct |
147 |
Q |
| |
|
||||| || || |||||||||||| ||||| |
|
|
| T |
8590580 |
atgcaatgctaaataagctgaaagctaaatct |
8590549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 6519244 - 6519344
Alignment:
| Q |
20 |
tgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgc |
119 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||| ||||||||| || ||||| | ||||| || |||||||||||| | |||||||| |
|
|
| T |
6519244 |
tgaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgc |
6519343 |
T |
|
| Q |
120 |
a |
120 |
Q |
| |
|
| |
|
|
| T |
6519344 |
a |
6519344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 6736941 - 6736885
Alignment:
| Q |
16 |
gagatgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacat |
72 |
Q |
| |
|
||||| ||||||||||||| || || |||||||||||||||||||| ||||||||| |
|
|
| T |
6736941 |
gagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacat |
6736885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 6555 - 6659
Alignment:
| Q |
16 |
gagatgaagcagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactg |
115 |
Q |
| |
|
||||| ||||||||||||| || || |||||||||||||||||||| ||||||||| || ||||||| ||||| || |||||||||||| | |||| |
|
|
| T |
6555 |
gagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactg |
6654 |
T |
|
| Q |
116 |
atgca |
120 |
Q |
| |
|
||||| |
|
|
| T |
6655 |
atgca |
6659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 41068416 - 41068463
Alignment:
| Q |
25 |
cagtaccaaagcatgtacgtgaagaagtggcttgatgatcttaaacat |
72 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||| ||||||||| |
|
|
| T |
41068416 |
cagtaccaaagcatatatgtgaagaattggcttgatgaacttaaacat |
41068463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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