View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_low_3 (Length: 739)
Name: NF19536_low_3
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 365 - 722
Target Start/End: Complemental strand, 34381805 - 34381448
Alignment:
| Q |
365 |
gttgatacattagtatgatcgtcaaatatactgttacattacaacattcaatcatagaagnnnnnnnnnnnc--gagttttgttgctcttccttaattat |
462 |
Q |
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| T |
34381805 |
gttgatacattagtatgatcgccaaatatactgttacattacaacattcaatcatagaagaaaaaaaaaaacaagagttttgttgctcttccctaattat |
34381706 |
T |
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| Q |
463 |
agacaacctaatatgatatgtactcatgaagtttgtaagaggtataaaaatgcatgatcaacggctttaattcatatgatactagagaccaaaaataaca |
562 |
Q |
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| T |
34381705 |
agacaacctaatatgatatgtactcatgaagtttgtaagaggtataaaaatgcatgatcaaaggctttaattcatatgatactagagaccaaaaataaca |
34381606 |
T |
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| Q |
563 |
ccatgcctctactttctttgccatatttaaagaaccgtttgacagacataaatctaaccaaaatcaacatcaaataaaatnnnnnnntagaactcatgtc |
662 |
Q |
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| T |
34381605 |
ccatgcctctactttctttgccatatttaaagaaccgtttgacagacataaatctaaccaaaatcaacatcaaataaaa--aaaaaatagaactcatgtt |
34381508 |
T |
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| Q |
663 |
aaccttacaagtgttgctggttgaaagatcatattagtagctctagtgtcgggttgtttt |
722 |
Q |
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| T |
34381507 |
aaccttacaagtgttgctggttgaaagatcatattagtagctctagtgtcgggttgtttt |
34381448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 34382159 - 34382041
Alignment:
| Q |
11 |
catcatcaccaatctccttctttgcacaaaccagtaaccaccaaaaattcaacattggaccaacatcaaccgcggccacggatggtaccatccagccacc |
110 |
Q |
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| T |
34382159 |
catcatcatcaatctccttctttgcacaaaccagttaccaccaaaaattcaacattggaccaacatcaaccgcggccacggatagtaccatccagccacc |
34382060 |
T |
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| Q |
111 |
ctcagggtccatgtattca |
129 |
Q |
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| T |
34382059 |
ctcagggtccatgtattca |
34382041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 34381966 - 34381873
Alignment:
| Q |
204 |
acctgtgatagggttatttgtatgtcatcatgagctttgcggcggcctaatccctattgtctggactttttgtgtgggtatttggcatatagta |
297 |
Q |
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| T |
34381966 |
acctgtgatagggttatgtgtatgtcatcatgagctttgcggcggcctaatccctattgtgtggactttttgtgtgggtatttggcatatagta |
34381873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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