View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_low_6 (Length: 534)
Name: NF19536_low_6
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_6 |
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| [»] scaffold0054 (5 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 511
Target Start/End: Complemental strand, 38291 - 37798
Alignment:
| Q |
18 |
aaattcatctcagtgagttcttcaaatgcttgtgaagattgcgtagaccaatattatcgacgacattggtaaacataacctaaacagtaaattggaaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38291 |
aaattcatctcagtgagttcttcaaatgcttgtgaagattgcgtagaccaatattatcgacgacattggtaaacataacctaaacagtaaattggaaaca |
38192 |
T |
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| Q |
118 |
aacacaaattaaaactgtcactttcttatgcgtcnnnnnnnctacagaatcacccagattggttaactcagagaggggcgaatcgggaataataaacaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38191 |
aacacaaattaaaactgtcactttcttatgcgtctttttttctacagaatcacccagatttgttaactcagagaggggcgaatcgggaataataaacaaa |
38092 |
T |
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| Q |
218 |
tagtgtatgggggagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaata |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38091 |
tagtgtatggggcagaagaaattctcatatatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaata |
37992 |
T |
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| Q |
318 |
gtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatca |
417 |
Q |
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| T |
37991 |
gaaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaacca |
37892 |
T |
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| Q |
418 |
ctgcctgcaacaaatgcaatggtgagttcatttagagaataaatcaactatgtgtacacctcaaataaatttcttagaagttgtgtttcaagct |
511 |
Q |
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| T |
37891 |
ctccctgcaacaaatgcaatggtgagttcatctagagaataaatcaactatgtgtatacctcaaataaatttcttagaagttgtatttctagct |
37798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 167 - 441
Target Start/End: Complemental strand, 41084 - 40812
Alignment:
| Q |
167 |
tcacccagattggttaactcagagaggggcgaatcgggaataataaacaaatagtgtatgggggagaagaaattctcatatatttttgtaagagaaaata |
266 |
Q |
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||||||||||||||||| |||||||||| ||| |||||||| |||| ||| |||| | ||||||||||||||||||||||| |||||| || | |
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| T |
41084 |
tcacccagattggttaatctagagaggggcaaattgggaataaaaaacggataatgtacaag--agaagaaattctcatatattttttgaagagacaaaa |
40987 |
T |
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| Q |
267 |
aaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaat |
366 |
Q |
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| T |
40986 |
aaacttgtgttaactattaggagattgaaaacatttacaaaaattaaaaaagaaaaggagattgagaaggttagaggttacttagggttaggattgcaat |
40887 |
T |
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| Q |
367 |
ttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaacaaatgcaatggtg |
441 |
Q |
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| T |
40886 |
ttgcaagcaaagttcgattctcttcgtgtcgtgtcgatggagaacaaatcaacggctgcaacaaatgcaaaggtg |
40812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 247 - 395
Target Start/End: Complemental strand, 49671 - 49523
Alignment:
| Q |
247 |
tatttttgtaagagaaaataaaacgtatgttaactattgggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggtta |
346 |
Q |
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||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||| |||||| |
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| T |
49671 |
tatttttttaagagaaaacaaaacatatgttaactattgggagatcgaaaatatttccaaaaggtaaaatagaaaaggagattgagaaggtcattggtta |
49572 |
T |
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| Q |
347 |
cttagggttaggattgcaatttgcaagcaaagttctactctcttcgtct |
395 |
Q |
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| T |
49571 |
cttagggttcagattgcaatatacaagcaaagttcgactctcttcgtct |
49523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 324 - 441
Target Start/End: Complemental strand, 34572 - 34455
Alignment:
| Q |
324 |
gagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctactctcttcgtcttgtgttgatgaagaagaaatcactgcct |
423 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||| ||| |||| |||||||||||||||| | || |
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| T |
34572 |
gagattgagaaggtcagtggttactttgggttaggattgaaatttgcaagcaaagttcgattctcttcatctcgtgtcgatgaagaagaaatcagcggct |
34473 |
T |
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| Q |
424 |
gcaacaaatgcaatggtg |
441 |
Q |
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| T |
34472 |
gcaacaaatgcaaaggtg |
34455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 426 - 519
Target Start/End: Complemental strand, 49520 - 49427
Alignment:
| Q |
426 |
aacaaatgcaatggtgagttcatttagagaataaatcaactatgtgtacacctcaaataaatttcttagaagttgtgtttcaagctcgtctgtg |
519 |
Q |
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||||||||||| |||||| |||| ||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520 |
aacaaatgcaaaggtgagctcatctagagaagaagtcaactatgtgtatacctcaaataaatttcttagaagttgtgtttcaagctcgtctgtg |
49427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 286 - 436
Target Start/End: Original strand, 13338974 - 13339124
Alignment:
| Q |
286 |
ggagatcgaaaatatatccgaaaagtaaaatagtaaaggagattgagaaggtcagtggttacttagggttaggattgcaatttgcaagcaaagttctact |
385 |
Q |
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|||||| |||||||| ||| || | ||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| | | ||| |
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| T |
13338974 |
ggagattgaaaatatttccaaacattaaaaaagaaaaggagattgagaaggttagtggttacttagggttagaattgcaatttgcaagtaaaatccgact |
13339073 |
T |
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| Q |
386 |
ctcttcgtcttgtgttgatgaagaagaaatcactgcctgcaacaaatgcaa |
436 |
Q |
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| T |
13339074 |
ctcttcgtctcgtgtcgatggagaagaaatcagaggctgcaacaattgcaa |
13339124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 24415371 - 24415328
Alignment:
| Q |
103 |
agtaaattggaaacaaacacaaattaaaactgtcactttcttat |
146 |
Q |
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| T |
24415371 |
agtaaattggaaacaaaccaaaactaaaactgtcactttcttat |
24415328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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