View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_low_7 (Length: 473)
Name: NF19536_low_7
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 34082832 - 34083273
Alignment:
| Q |
13 |
aatatacaaattgtgttgggattaagtttcattggttaatttactaactaatgtcttgccttgatcgaccctaaagtgcttttattttaattaaacctta |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
34082832 |
aatatacaaattgtgttgggattaagtttcatcagttaatttactaactaatgtcttgccttgatcgaccctaaactgcttttattttaattaaatttta |
34082931 |
T |
|
| Q |
113 |
acctaccacccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactcagttagctaaaagagaaaca |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||| | || |||||||||||||||||| || |||| |||||||| ||||||||||||||||||| |
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| T |
34082932 |
acctaccatccttcatagatctcaatgtctcgcatataacctgatatcatctctagtctcttacctctgatatctcactcggttagctaaaagagaaaca |
34083031 |
T |
|
| Q |
213 |
ttaagttcggatgtttagcttgatatctcagcaactaacatttacaagtgaactaacccatgtcccttacatcggacaaaacaaagcaatagaagataga |
312 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34083032 |
ttaagttcggatgtttagcttgatttctc-gcaactaacatttacaagtgaacttacccatgtcccttacatcggac-aaacaaagcaatagaagataga |
34083129 |
T |
|
| Q |
313 |
aatcaattcaaagacaaacctataaaactaatatacagatcacccaactaaattcacaatgccatgaaaggagcacaagtaaacagacaagttgtagttt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34083130 |
aatcaattcaaagacaaacctataaaactaatatacatct-acccaactaaattcacaatgccatgaaaggagcacaagtaaacagacaagttgtagttt |
34083228 |
T |
|
| Q |
413 |
cttatagcaactcctggctgaaaagttgcagcacacagttagttt |
457 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34083229 |
cttatagcaactcctggctgaaaagttgcagcacacagttagttt |
34083273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 18435663 - 18435724
Alignment:
| Q |
159 |
tcatctctagtctcttatctttgatgtctcactcagttagctaaaagagaaacattaagttc |
220 |
Q |
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| T |
18435663 |
tcatctcttgtctctaaaatctgatgtttcactcagttagctaaaagtgaaacattaagttc |
18435724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 26744451 - 26744345
Alignment:
| Q |
113 |
acctaccacccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactcagttagctaaaagagaaaca |
212 |
Q |
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||||| ||||||||||||||||| ||||||| || ||||| |||||| ||||||||| ||| | ||||||||||| ||||||||||||| |||||| || |
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| T |
26744451 |
acctatcacccttcatagatctcgatgtctcacaaataatgggagataatctctagtatctaacctttgatgtcttgctcagttagctaatagagaagca |
26744352 |
T |
|
| Q |
213 |
ttaagtt |
219 |
Q |
| |
|
|| |||| |
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|
| T |
26744351 |
tttagtt |
26744345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 220
Target Start/End: Complemental strand, 7480506 - 7480408
Alignment:
| Q |
122 |
ccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactcagttagctaaaagagaaacattaagttc |
220 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||| ||||||||||||||| | ||| |||||||| | || |||||||||| || |||||||||| |
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| T |
7480506 |
ccttcatagatctcaatgtctcgcagataattggaaatcatctctagtctccaaccttcgatgtctcgcctaggaagctaaaagataagcattaagttc |
7480408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 31930738 - 31930612
Alignment:
| Q |
94 |
ttattttaattaaaccttaacctaccacccttcatagatctcaatgtctcgcatataatcggagatcatctctagtctcttatctttgatgtctcactca |
193 |
Q |
| |
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|||||| ||||| ||||| || || |||| | ||||||||| ||||||| | ||||| |||||| |||||||||||| | | |||||||| | || |
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| T |
31930738 |
ttatttcaattataccttcacttatcaccttaaatagatctcgatgtctcatagataatgagagatcgtctctagtctctaacttatgatgtcttgccca |
31930639 |
T |
|
| Q |
194 |
gttagctaaaagagaaacattaagttc |
220 |
Q |
| |
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||||||| |||||||| |||||||||| |
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|
| T |
31930638 |
gttagctgaaagagaagcattaagttc |
31930612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 23720209 - 23720254
Alignment:
| Q |
170 |
ctcttatctttgatgtctcactcagttagctaaaagagaaacatta |
215 |
Q |
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||||||||||||||||||| |||| |||||||||||| || ||||| |
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| T |
23720209 |
ctcttatctttgatgtctcgctcaattagctaaaagataagcatta |
23720254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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