View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19536_low_8 (Length: 467)
Name: NF19536_low_8
Description: NF19536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19536_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 450
Target Start/End: Original strand, 40092095 - 40092531
Alignment:
| Q |
12 |
aagaaagacaacaaaagttaaggggaagaaaagtcttcacacctttcctttgagatcaagagcctcagcagtaccaatctgctcaagttttttctcaatt |
111 |
Q |
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| T |
40092095 |
aagaaagacaagaaaagttaaggggaaaaaaagtcttcacacctttcctttgagatcaagagcctcagcagtaccaatctgctcaagttttttctcaatt |
40092194 |
T |
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| Q |
112 |
gtaacatccactctactgatgtagaaagctgctgcacttgaaaccttggagagatcagtgttactagaagcttcaagaccatccaagtaagcattaataa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092195 |
gtaacatccactctactgatgtagaaagctgctgcacttgaaaccttggagagatcagtgttactagaagcttcaagaccatccaagtaagcattaataa |
40092294 |
T |
|
| Q |
212 |
ctgcttcatatatagggagagagaatatgagctgttcaaatacaaaaactatataagcatattgctgttggagtnnnnnnnntgatcaattttgtttata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40092295 |
ctgcttcatatatagggagagagaatatgagctgttcaaatacaaaaactatataagcatattgctgttggagtaaaaaaaatgatcaattttgtttata |
40092394 |
T |
|
| Q |
312 |
taagaatgttgttgataaataacaaacttacagtgacatttacactgatccctagagaaatgacttcctttattgaaggaatggattcatgagttgcagg |
411 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40092395 |
taagga--atgttgataaataacaaacttacagtgacatttacactgatccctagagaaatgacttcctttattgaaggaatggattcatgagttgcagg |
40092492 |
T |
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| Q |
412 |
aattttaatataaacatttggacatccaaccattttatg |
450 |
Q |
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| T |
40092493 |
aattttaatataaacatttggacatccaaccattttatg |
40092531 |
T |
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