View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19537_low_1 (Length: 484)
Name: NF19537_low_1
Description: NF19537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19537_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 465
Target Start/End: Original strand, 34550842 - 34551290
Alignment:
| Q |
9 |
gaagaatattgataaagaagcaacaaataaaggttggtccgatcgataagaatta--ctcctatttcacaagag-cgtagacttagttccactgcagtct |
105 |
Q |
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| T |
34550842 |
gaagaatattgataaagaagcaacaaatgaaggttggtccggtcaataagaattaaacttgtatttcacaagaggcgtagacttagttccactgcagtct |
34550941 |
T |
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| Q |
106 |
gcagcataatatgttgttatgttagcgttttttgagcttgagatttgtcttgactttagcctatccatttaaaaaatccatgtaaatttttatttattta |
205 |
Q |
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| T |
34550942 |
gcagcataatatgttattatgttagcgttttttgagcttgagatttgtcttgactttagcctatccatttaaaaaatccatgtaaatttttatttatg-- |
34551039 |
T |
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| Q |
206 |
tttatagaagaaaaatattccgaggtacggctgttaaaaatactcaaattataggagcaattcttttaacaattggcataggaatttt--aatattaggc |
303 |
Q |
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| T |
34551040 |
------gaagaaaaatattccgaggtacggctgttaaaaatactcaaattataggagcaattcttttaacaattggcataggaattttttaatattagac |
34551133 |
T |
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| Q |
304 |
ttgtccttgtttaagaacttattttgaatagacagatacaattatttgagagcataaaataaaagaaaaagattttactttattctccaaaaatgtcagt |
403 |
Q |
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| T |
34551134 |
ttgtccttgtttaagaacttattttgaatagacagatacaattatttgagagcataa-----aagaaaaagattttactttattctccaaaaatgtcagt |
34551228 |
T |
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| Q |
404 |
tcataacattctttcaaaaatatcacgaggcttctggagaatgcaattctagccatgatctg |
465 |
Q |
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| T |
34551229 |
tcataaaattctttcaaaaatatcatgaggcttctggagaatgcaattctagccatgatctg |
34551290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 212 - 420
Target Start/End: Original strand, 34547746 - 34547958
Alignment:
| Q |
212 |
gaagaaaaatattccga-ggtacggctgttaaaaatactcaaattataggagcaattcttttaacaattggcataggaattttaatattaggcttgtcct |
310 |
Q |
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| T |
34547746 |
gaagaaaattattccgaaggtacggccattaaaaatactctaatcacagggacagttcttttaacaattggcatacgaattttgatataaggctttttcc |
34547845 |
T |
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| Q |
311 |
tgtttaagaacttattttgaatagacagatacaattatttgagagcataaaataaaagaaaaagattttactttattctc----caaaaatgtcagttca |
406 |
Q |
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| T |
34547846 |
tgtttaagaactttatttggat-gttaggtacaattatttgagtgtgtaatagaatagaagatgatcttactttattctctaaataaaaatgtcagttca |
34547944 |
T |
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| Q |
407 |
taacattctttcaa |
420 |
Q |
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| T |
34547945 |
taaaattctctcaa |
34547958 |
T |
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