View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19537_low_2 (Length: 308)

Name: NF19537_low_2
Description: NF19537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19537_low_2
NF19537_low_2
[»] chr5 (1 HSPs)
chr5 (16-308)||(34390565-34390857)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 34390857 - 34390565
Alignment:
Q  16 atagaataagatttattaattgtttaattttgtttgtatgtatgtaagggtgcaagtgtgctggcttttttgtgtatttgaagttcata-taccatatag 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  34390857 atagaataagatttattaattgtttaattttgtttgtatgtatgtaagggtgcaagtgtgcttgcttttttgtgtatttgaagttcatattaccatatag 34390758  T
Q  115 atagattatttctgtttctttaannnnnnnccgggtttcttataatatacaattgtttgattcattataccctcnnnnnnnntttgtttgattcattatg 214  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||    
T  34390757 atagattatttctgtttctttaa-ttttttccgggtttcttataatatacaattgtttgattcattataccctc-aaaaaaatttgtttgattcattatg 34390660  T
Q  215 aaactctaattaatttcaccaattcagtaagaatataacattctttgt-nnnnnnntaatttacaatctactatgatgcttagtattcaagtgca 308  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  34390659 aaactctaattaatttcaccaattcagttagaatataacattctttgtaaaaaaaataatttacaatctactatgatgcttagtattcaagtgca 34390565  T

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