View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19537_low_3 (Length: 300)
Name: NF19537_low_3
Description: NF19537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19537_low_3 |
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| [»] scaffold0592 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 38063845 - 38063955
Alignment:
| Q |
16 |
aaaatacacaattttcaaataaaatttataaactaatttaaacgcagtccaacaattataggataacacagtccacacgctgccttctcaattgtttata |
115 |
Q |
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| T |
38063845 |
aaaatacacaattttcaaataaaatttataaactaatttaaacacagtccaacaattataggataacacagtccacacgctgccttctcaattgtttata |
38063944 |
T |
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| Q |
116 |
tattttaattt |
126 |
Q |
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||||||||||| |
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| T |
38063945 |
tattttaattt |
38063955 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 38064002 - 38064105
Alignment:
| Q |
173 |
cacaactatcggttctcatatccacatttaaataaataaatactatctatcaatccacgcttttccgagtttttaatttaaggattaatggtgttttttc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||| || ||||| | |
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| T |
38064002 |
cacaactatcggttctcatatccacatttaaataaataaatattatctatcaa-----gctttttcgagtttttaatttaagagttaatagt-tttttcc |
38064095 |
T |
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| Q |
273 |
tccgataaat |
282 |
Q |
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|||||||||| |
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| T |
38064096 |
tccgataaat |
38064105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0592 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0592
Description:
Target: scaffold0592; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 1366 - 1312
Alignment:
| Q |
54 |
taaacgcagtccaacaattataggataacacagtccacacgctgccttctcaatt |
108 |
Q |
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| T |
1366 |
taaacacaatccaacaattataggataacacactccacacactgccttctcaatt |
1312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 94291 - 94252
Alignment:
| Q |
54 |
taaacgcagtccaacaattataggataacacagtccacac |
93 |
Q |
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| T |
94291 |
taaacacaatccaacaattataggataacacagtccacac |
94252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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