View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19537_low_4 (Length: 269)
Name: NF19537_low_4
Description: NF19537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19537_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 39436564 - 39436314
Alignment:
| Q |
1 |
atgtcttacagcggaaagtaaaactagagttcaaccattctttcaaattttcatatatgaacagataagtgaatcaataatatcaacagaacaaggaaat |
100 |
Q |
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| T |
39436564 |
atgtcttacagcggaaagtaaaactagagttcaaccattctttcaaattttcatatatgaacagataagtgaatcaataatatcaacagaacaaggaaat |
39436465 |
T |
|
| Q |
101 |
tggcaccgataataaatcaaggaaaagaacattatttgtttatttatttattttaagaccgattcacaaataggcatcgataacaaaaacaattcatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39436464 |
tggcaccgataataaatcaaggaaaagaacattatttgtttatttatttattttaagaccgattcacaaataggcatcgataacaaaaacaattcatgta |
39436365 |
T |
|
| Q |
201 |
ggcatggataggcatcagtgtcatgtatatcaaataggctttgtaaacaat |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39436364 |
ggcatggataggcatcagtgtcatgtatatcaaataggctttgtaaacaat |
39436314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 3472349 - 3472156
Alignment:
| Q |
21 |
aaactagagttcaaccattctttcaaattttcatatatgaacagataagtgaatcaataatatcaacagaacaaggaaattggcaccgataataaatcaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3472349 |
aaactagagttcaaccattctttcaaattttcatatatgaacggataagtgaatcaataatatcaacagaacaaggaaattggcaccgataataaatcaa |
3472250 |
T |
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| Q |
121 |
ggaaaagaacattatttgtttatttatttattttaagaccgattcacaaataggcatcgataacaaaaacaattcatgtaggcatggataggca |
214 |
Q |
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| T |
3472249 |
gtaaaataacattatttgtttatttatttattttaagaccgattcgcaaataggcatcgataacaaaaacaattcatgtaggcatggataggca |
3472156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 29601622 - 29601827
Alignment:
| Q |
1 |
atgtcttacagcggaaagtaaaactagagttcaaccattctttcaaattttcatatatgaacagataagtgaatcaataatatcaacagaacaaggaaat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
29601622 |
atgtcttacagaggaaagtaaaactagagttcaaccattctttcaaattttcatatatgaacggataagtcaatcaataatatcaacagaacaagaaaat |
29601721 |
T |
|
| Q |
101 |
tggcaccgataataaatcaaggaaaagaacattatttgtttatttatttattttaagaccgattcacaaataggcatcgataacaaaaacaattcatgta |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29601722 |
tggcaccgataataaatcaaggaaaggaacattatttg--------cttattttaagaccgattcacaattaggcatcgataacaaaaacaattcatgta |
29601813 |
T |
|
| Q |
201 |
ggcatggataggca |
214 |
Q |
| |
|
|||||||||||||| |
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| T |
29601814 |
ggcatggataggca |
29601827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 26224135 - 26224342
Alignment:
| Q |
1 |
atgtcttacagcggaaagtaaaactagagttcaaccattctttcaaattttcatatatgaacagata--agtgaatcaataatatcaacagaacaaggaa |
98 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| || |
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| T |
26224135 |
atgtcttacaaaggaaagtaaaactagagttcaaccattctttctaattttcatatatgaacggatataagtgaatcaataatatcaacagaacaagaaa |
26224234 |
T |
|
| Q |
99 |
attggcaccgataataaatcaaggaaaagaacattatttgtttatttatttattttaagaccgattcacaaataggcatcgataacaaaaacaattcatg |
198 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26224235 |
attggcaccgataataaatcaaggaaagaaacattatttg--------cttattttaagaccgattcacaattaggcatcgataacaaaaacaattcatg |
26224326 |
T |
|
| Q |
199 |
taggcatggataggca |
214 |
Q |
| |
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|||||||||||||||| |
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|
| T |
26224327 |
taggcatggataggca |
26224342 |
T |
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