View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19538_high_10 (Length: 280)
Name: NF19538_high_10
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19538_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 34820052 - 34819794
Alignment:
| Q |
3 |
gagaataaatgtgtttagtgcaaaagcaataagaagatctaagtctgaatcagaaatctttgctggaagttttattgacgagagtatcaccaaaaatgat |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
34820052 |
gagactaaatgtgtttagtgcaaaagcaattagaagatccaagtctgaatcagaaatcttggctgggagttttgttgacgagagtatcaccaaaaatgat |
34819953 |
T |
|
| Q |
103 |
gttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaaagaagaaagggaagagttatgaaggcgaggcca |
202 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
34819952 |
gatggtacgtatgcggtggttttgcaagctaagattgaccatcaactcgttgaggcatgtcctttaaagaagaaagggaagagtgataaaggcgaggcca |
34819853 |
T |
|
| Q |
203 |
acaagaagaaggtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacagg |
261 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34819852 |
acaagaagaatgtcgagtgcgttcttgaggttgagatcggcggctccttgtggaacagg |
34819794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 34820261 - 34820119
Alignment:
| Q |
70 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgctgaggcatgtcctttaa |
169 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| ||||||||| || ||||| |||| ||||| || |||||||||||||||||||||| | |||||||| |
|
|
| T |
34820261 |
agttttgttgacgagagcatcacaaaaaataatgttggtacgtcataggtgactttggaagctgaggttgaccatcaactcgctgaggcgtctcctttaa |
34820162 |
T |
|
| Q |
170 |
agaagaaagggaagagttatgaaggcgaggccaacaagaagaa |
212 |
Q |
| |
|
||||||||||||||||| || |||||||| | | ||||||||| |
|
|
| T |
34820161 |
agaagaaagggaagagtgataaaggcgagacaaccaagaagaa |
34820119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 34820612 - 34820530
Alignment:
| Q |
70 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
152 |
Q |
| |
|
|||||| ||||||| |||||||| |||| |||||| ||||||| |||||||||||| ||| | || |||||||||| ||||| |
|
|
| T |
34820612 |
agttttgttgacgaaagtatcactaaaattgatgtcggtatgtcggaggtggttttggaagttgagcttgaccatcagctcgc |
34820530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 34820377 - 34820296
Alignment:
| Q |
71 |
gttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
152 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||| | | |||||||||||||||| |
|
|
| T |
34820377 |
gttttgttgacgagagtatcacaaaaaatgattttggtacgtcagaggtggctttggaagttgtggttgaccatcaactcgc |
34820296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 34820729 - 34820653
Alignment:
| Q |
70 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatca |
146 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| |||||| || ||||||| |||| ||||| || || ||||||| |
|
|
| T |
34820729 |
agttttgttgacgagagtatcacaaaaaatgatattggtacgtcagaggtggctttggaagctgaggttaaccatca |
34820653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 34820846 - 34820807
Alignment:
| Q |
70 |
agttttattgacgagagtatcaccaaaaatgatgttggta |
109 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
34820846 |
agttttgttgacgagagtatcacaaaaaatgatgttggta |
34820807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 34820495 - 34820413
Alignment:
| Q |
70 |
agttttattgacgagagtatcaccaaaaatgatgttggtatgtatgaggtggttttgcaagctaagattgaccatcaactcgc |
152 |
Q |
| |
|
|||||| ||||||||||| ||| |||||||||||||||| | |||||||||||| ||| | || |||||||||| ||||| |
|
|
| T |
34820495 |
agttttgttgacgagagtgtcataaaaaatgatgttggtacatcagaggtggttttgaaagttgaggttgaccatcagctcgc |
34820413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University