View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19538_high_2 (Length: 444)

Name: NF19538_high_2
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19538_high_2
NF19538_high_2
[»] chr8 (7 HSPs)
chr8 (20-444)||(11395434-11395859)
chr8 (373-422)||(12848610-12848659)
chr8 (365-426)||(12848705-12848766)
chr8 (365-431)||(11921687-11921753)
chr8 (364-428)||(12848990-12849054)
chr8 (187-231)||(12849098-12849142)
chr8 (187-231)||(11921598-11921642)


Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 20 - 444
Target Start/End: Complemental strand, 11395859 - 11395434
Alignment:
Q  20 gcgaggcttgaaatccattggatgcattgttcatcttcctatcacaaattccacacnnnnnnntaagtaagattcattgaattacagaaatttaaaactc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||    
T  11395859 gcgaggcttgaaatccattggatgcattgttcatcttcctatcacaaattccacacaaaaaaataagtaatattcattgaattacagaaatttaaaactc 11395760  T
Q  120 cgtagaatgnnnnnnnn-gcatatcacagttcatcgcgatatctaacttcatttctagatccattaatttcacatgattcgaacatagcgttacgcagaa 218  Q
    |||||||||         |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11395759 cgtagaatgaaaaaaaaagcatatcacagttcattgcgatatctaacttcatttctagatccattaatttcacatgattcgaacatagcgttacgcagaa 11395660  T
Q  219 tatactaaactcgaaaacgcggaagtaaaaaataagctaaaatcatactggaacggttgcatttgaaaatatgaacgaagttcaaaattggaatctagaa 318  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11395659 tatactaaatccgaaaacgaggaagtaaaaaataagctaaaatcatactcgaacggttgcatttgaaaatatgaacgaagttcaaaattggaatctagaa 11395560  T
Q  319 tttgttatataagaatgaaataagtataaacagtgtttccgacttggattgacgtgaagtgaacctggaataaacgtgaggaggagggaagacggagatg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11395559 tttgttatataagaatgaaataagtataaacagtgtttccgacttggattgaagtgaagtgaacctggaataaacgtgaggaggagggaagacggagatg 11395460  T
Q  419 gaggagagatcggaggctttgttgat 444  Q
    ||||||||||||||||||||||||||    
T  11395459 gaggagagatcggaggctttgttgat 11395434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 422
Target Start/End: Complemental strand, 12848659 - 12848610
Alignment:
Q  373 tgaagtgaacctggaataaacgtgaggaggagggaagacggagatggagg 422  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  12848659 tgaagtgaacctggaaaaaacgtgaggaggagggatgacggagatggagg 12848610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 426
Target Start/End: Complemental strand, 12848766 - 12848705
Alignment:
Q  365 gattgacgtgaagtgaacctggaataaacgtgaggaggagggaagacggagatggaggagag 426  Q
    |||||| ||||||||||||||||| |||||||||||| ||| | ||||||||||||||||||    
T  12848766 gattgaagtgaagtgaacctggaaaaaacgtgaggagcaggaacgacggagatggaggagag 12848705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 11921687 - 11921753
Alignment:
Q  365 gattgacgtgaagtgaacctggaataaacgtgaggaggagggaagacggagatggaggagagatcgg 431  Q
    |||||| ||||||||||||||||  ||| |||||||| ||||| |||||||||||||||| ||||||    
T  11921687 gattgaagtgaagtgaacctggagaaaatgtgaggagcagggacgacggagatggaggagcgatcgg 11921753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 12849054 - 12848990
Alignment:
Q  364 ggattgacgtgaagtgaacctggaataaacgtgaggaggagggaagacggagatggaggagagat 428  Q
    ||||||| ||||||||||||||||  |||||||||||| ||| | |||||||||||| |||||||    
T  12849054 ggattgaagtgaagtgaacctggagaaaacgtgaggagcaggaacgacggagatggatgagagat 12848990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 12849142 - 12849098
Alignment:
Q  187 ttcacatgattcgaacatagcgttacgcagaatatactaaactcg 231  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||    
T  12849142 ttcacatgattcgaacatagcgttatgcagaataagctaaactcg 12849098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 11921598 - 11921642
Alignment:
Q  187 ttcacatgattcgaacatagcgttacgcagaatatactaaactcg 231  Q
    |||||||||||| |||||||||||| ||||||||  |||||||||    
T  11921598 ttcacatgattcaaacatagcgttatgcagaataagctaaactcg 11921642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University