View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19538_high_3 (Length: 425)
Name: NF19538_high_3
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19538_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 109 - 413
Target Start/End: Complemental strand, 34102653 - 34102349
Alignment:
| Q |
109 |
tgttttcttgatttaatgnnnnnnnncattcaatcttcaattttgtatgatcatatatgtttaaactcttgttttgattcgtattgattctatcaattcc |
208 |
Q |
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| T |
34102653 |
tgttttcttgatttaatgttttttttcattcaatcttcaattttgtatgatcatatatgtttaaactcttgttttgattcgtattgattctatcaattcc |
34102554 |
T |
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| Q |
209 |
aattcataattgtgtatgtgtttgaaggtttaatttgtttccattctaatatgattctgttaaattgtaattgtgcacttccttagggttattcgagaat |
308 |
Q |
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| T |
34102553 |
aattcataattgtgtatgtgtttgaacgtttaatttgtttccattctaatatgattctgttaaattgtaattgtgcacttccttagggttattcgagaat |
34102454 |
T |
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| Q |
309 |
taattaagagacttgttttaacttattattgaatgaagattgttaggttctttaacgcattgttatcggtttcatagaattcagttattaggttaatcac |
408 |
Q |
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| T |
34102453 |
taattaagagacttgttttaacttattattgaatgaagatttttaggttctttaacgcatcgttatcggtttcatagaattcagttattaggttagtcac |
34102354 |
T |
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| Q |
409 |
aggtt |
413 |
Q |
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||||| |
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| T |
34102353 |
aggtt |
34102349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 37383213 - 37383150
Alignment:
| Q |
342 |
tgaagattgttaggttctttaacgcattgttatcggtttcatagaattcagttattaggttaat |
405 |
Q |
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| T |
37383213 |
tgaagattgttaggttctttaacgcttggttattggttttatagaattcagttattaggttaat |
37383150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 31172159 - 31172080
Alignment:
| Q |
155 |
atgatcatatatgtttaaactcttgttttgattcgtattgattctatcaattccaattcataattgtgtatgtgtttgaa |
234 |
Q |
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| T |
31172159 |
atgatcatatatgtttagacgtttgtttcatttcatattgattctatcaattacaactcataattttttatgtgtttgaa |
31172080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 13213309 - 13213224
Alignment:
| Q |
320 |
cttgttttaacttattattgaatgaagattgttaggttctttaacgcattgttatcggtttcatagaattcagttattaggttaat |
405 |
Q |
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| T |
13213309 |
cttgttttaatttatatttgagtgaagattgttaggttctgaaacgctttgttattggtttgatagaatttgataattaggttaat |
13213224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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