View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19538_high_4 (Length: 404)

Name: NF19538_high_4
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19538_high_4
NF19538_high_4
[»] chr8 (9 HSPs)
chr8 (19-285)||(39431332-39431595)
chr8 (268-365)||(27321753-27321850)
chr8 (337-392)||(13243210-13243265)
chr8 (307-354)||(24965150-24965197)
chr8 (307-365)||(36406419-36406477)
chr8 (314-365)||(28928187-28928238)
chr8 (319-378)||(34282802-34282861)
chr8 (331-394)||(34282835-34282898)
chr8 (268-361)||(3383910-3384003)
[»] chr4 (14 HSPs)
chr4 (307-392)||(52373855-52373940)
chr4 (307-365)||(46645731-46645789)
chr4 (307-365)||(10715784-10715842)
chr4 (307-365)||(10929554-10929612)
chr4 (307-365)||(40969352-40969410)
chr4 (307-365)||(43003114-43003172)
chr4 (268-353)||(31364254-31364339)
chr4 (307-378)||(9003670-9003741)
chr4 (307-365)||(4728686-4728744)
chr4 (307-353)||(10058656-10058702)
chr4 (307-365)||(50099998-50100056)
chr4 (268-354)||(14044463-14044549)
chr4 (313-354)||(25237727-25237768)
chr4 (314-354)||(2521835-2521875)
[»] chr3 (7 HSPs)
chr3 (307-392)||(41218285-41218370)
chr3 (307-365)||(7501089-7501147)
chr3 (312-365)||(43700128-43700181)
chr3 (307-354)||(53987975-53988022)
chr3 (268-365)||(33178983-33179080)
chr3 (307-353)||(26370972-26371018)
chr3 (307-353)||(37516766-37516812)
[»] chr2 (13 HSPs)
chr2 (313-394)||(17148895-17148976)
chr2 (307-361)||(29257498-29257552)
chr2 (307-394)||(45444383-45444466)
chr2 (268-378)||(303982-304092)
chr2 (268-354)||(17249469-17249555)
chr2 (314-365)||(18299079-18299130)
chr2 (307-353)||(22572651-22572697)
chr2 (307-365)||(41010640-41010698)
chr2 (307-365)||(41114799-41114857)
chr2 (268-354)||(2475945-2476031)
chr2 (313-365)||(6799821-6799873)
chr2 (337-394)||(25563050-25563107)
chr2 (268-365)||(13203895-13203992)
[»] chr6 (12 HSPs)
chr6 (268-364)||(15122172-15122268)
chr6 (277-365)||(9696183-9696271)
chr6 (273-365)||(14938818-14938910)
chr6 (268-365)||(2960800-2960897)
chr6 (332-392)||(34188899-34188959)
chr6 (281-365)||(2836071-2836155)
chr6 (307-365)||(2941350-2941408)
chr6 (307-365)||(23663689-23663747)
chr6 (307-365)||(34248943-34249001)
chr6 (268-353)||(1780934-1781019)
chr6 (307-365)||(10397739-10397797)
chr6 (307-365)||(28614334-28614392)
[»] chr5 (20 HSPs)
chr5 (307-365)||(15675440-15675498)
chr5 (307-392)||(767398-767483)
chr5 (307-392)||(13942683-13942767)
chr5 (307-378)||(15504063-15504134)
chr5 (262-365)||(14832696-14832799)
chr5 (307-365)||(35469030-35469088)
chr5 (268-378)||(6900881-6900991)
chr5 (307-388)||(36234485-36234566)
chr5 (307-378)||(7162014-7162085)
chr5 (307-378)||(32953598-32953669)
chr5 (307-354)||(37552052-37552099)
chr5 (307-354)||(37654882-37654929)
chr5 (307-365)||(1672417-1672475)
chr5 (268-378)||(16567905-16568015)
chr5 (307-394)||(12267313-12267399)
chr5 (307-361)||(2476496-2476550)
chr5 (307-365)||(30249092-30249150)
chr5 (307-353)||(33007025-33007071)
chr5 (307-361)||(34444097-34444151)
chr5 (307-353)||(34846485-34846531)
[»] chr1 (12 HSPs)
chr1 (268-353)||(9527196-9527281)
chr1 (307-365)||(14727457-14727515)
chr1 (268-378)||(4774086-4774196)
chr1 (307-365)||(27460806-27460864)
chr1 (312-365)||(4641972-4642025)
chr1 (307-392)||(49898492-49898573)
chr1 (307-361)||(25007595-25007649)
chr1 (331-365)||(27583967-27584001)
chr1 (307-353)||(31844571-31844617)
chr1 (307-353)||(33468901-33468947)
chr1 (307-361)||(37153920-37153974)
chr1 (307-361)||(44305543-44305597)
[»] chr7 (10 HSPs)
chr7 (307-390)||(4843422-4843505)
chr7 (268-354)||(3012460-3012546)
chr7 (268-364)||(21932633-21932729)
chr7 (307-354)||(22206616-22206663)
chr7 (307-354)||(22228076-22228123)
chr7 (331-392)||(19377511-19377573)
chr7 (268-351)||(26722850-26722933)
chr7 (307-353)||(28693933-28693979)
chr7 (329-365)||(21688276-21688312)
chr7 (314-354)||(25688148-25688188)
[»] scaffold0618 (1 HSPs)
scaffold0618 (307-361)||(1827-1881)
[»] scaffold0638 (1 HSPs)
scaffold0638 (307-353)||(4217-4263)
[»] scaffold0075 (1 HSPs)
scaffold0075 (307-361)||(11655-11709)
[»] scaffold0021 (1 HSPs)
scaffold0021 (307-355)||(109234-109282)


Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 39431332 - 39431595
Alignment:
Q  19 gatgttcaaagtattttatgattgaagatttgtgtgaaatgagtgaaaggaaagaggaaccattgaatgtgaaagttaggaagatttgacctttaaattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39431332 gatgttcaaagtattttatgattgaagatttgtgtgaaatgagtgaaaggaaagaggaaccattgaatgtgaaagttaggaagatttgacctttaaattt 39431431  T
Q  119 tgggtagtggtggtggtaatggtaatggataagtcgatcaagcgggtatgtctagtctctcatgatttatggttttttgctagattgataattggcttgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  39431432 tgggtagtggtggtggtaatggtaatggataagtcgatcaagcgggtatgtctagtctctcatgatttatggttttttgctagattgataattggtttg- 39431530  T
Q  219 ttcatcattctccaccatataattaatatgaacaagttagctata-gcattggcagagtcagaaattt 285  Q
       |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  39431531 ---atcattctccaccatataattaatatgaacaagttagctataggcattggcggagccagaaattt 39431595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 27321753 - 27321850
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||||||| ||||||||||||||||  || ||       |||| |||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  27321753 tggcagagccagaaattttatagagcctgggcaaaaaaattatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataatttc 27321850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 392
Target Start/End: Complemental strand, 13243265 - 13243210
Alignment:
Q  337 ataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 392  Q
    ||||||||||||||||||  ||||||||| | |||||||||| |||||||||||||    
T  13243265 ataatttcacatttcctgcggataatttcacatttcttgcggatcctaaaatccta 13243210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 24965197 - 24965150
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    |||| ||||||  |||||||||||||||||||||||||||||||||||    
T  24965197 ttatcgcaaaaccttactttctttctgcgaataatttcacatttcctg 24965150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 36406419 - 36406477
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||| || ||||||||||    
T  36406419 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcttgcagataatttc 36406477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 365
Target Start/End: Complemental strand, 28928238 - 28928187
Alignment:
Q  314 aaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  28928238 aaaaagttacttccttcctgcgaataatttcacattttctgcagataatttc 28928187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 34282802 - 34282861
Alignment:
Q  319 gttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 378  Q
    ||||||| ||| |||||||||||||||||||||||| | |||||||| | |||| |||||    
T  34282802 gttacttccttcctgcgaataatttcacatttcctgcaaataatttcacatttcatgcgg 34282861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 34282835 - 34282898
Alignment:
Q  331 ctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 394  Q
    |||| |||||||||||||||| ||  ||||||||| | |||| ||||| |||||||||||||||    
T  34282835 ctgcaaataatttcacatttcatgcggataatttcacatttcctgcggatcctaaaatcctatg 34282898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 361
Target Start/End: Original strand, 3383910 - 3384003
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    |||| ||| |||||||||||||||  ||||||       |||| |||||| ||||||| ||| || ||||||||||||| ||||||| ||||||    
T  3383910 tggcggagccagaaattttatagaacatgagcaaaaattttatcgcaaaacgttacttccttcctacgaataatttcacgtttcctgcagataa 3384003  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 52373940 - 52373855
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 392  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||||  ||||||||| | |||| ||||| |||||||||||||    
T  52373940 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatttcacatttcatgcggatcctaaaatccta 52373855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 46645789 - 46645731
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  46645789 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtatataatttc 46645731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 10715842 - 10715784
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| ||||||  |||||| ||| |||||||||||||||||||||||| ||||||||||    
T  10715842 ttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 10715784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 10929612 - 10929554
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| ||||||  |||||| ||| |||||||||||||||||||||||| ||||||||||    
T  10929612 ttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 10929554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 40969410 - 40969352
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||||||||||||||||||| |||| ||| ||||||||||    
T  40969410 ttatcgcaaaacgttacttcctttctgcgaataatttcatattttctgcagataatttc 40969352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 43003114 - 43003172
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||||||| || |||||||  || |||||||||||||||||||||||| ||||||||||    
T  43003114 ttattgcagaacgttacttctttcctgcgaataatttcacatttcctgcagataatttc 43003172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 31364339 - 31364254
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| ||| |||||||||||||||| ||| ||       |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  31364339 tggcggagccagaaattttatagagcatgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 31364254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 9003741 - 9003670
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 378  Q
    |||| |||||| ||||||| |||  |||||||||||||||||||||| | ||||||||| | |||| |||||    
T  9003741 ttatcgcaaaatgttacttccttcttgcgaataatttcacatttcctatggataatttcacatttcctgcgg 9003670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 4728744 - 4728686
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| |||| ||||||||||||||| ||| ||||||||||    
T  4728744 ttatcgcaaaacgttacttccttcctgcaaataatttcacattttctgcagataatttc 4728686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 10058702 - 10058656
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  10058702 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 10058656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 50100056 - 50099998
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| || |||||||||||||||||||||  |||||||||    
T  50100056 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcggataatttc 50099998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 14044549 - 14044463
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    |||| ||| |||||||||||||||||||| ||       |||| |||||| ||||| | ||| ||| ||||||||||||||||||||    
T  14044549 tggcggagccagaaattttatagagtatgggcaaaaaaattatcgcaaaatgttacctccttcctgagaataatttcacatttcctg 14044463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 25237768 - 25237727
Alignment:
Q  313 caaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  25237768 caaaacgttacttccttcctgcgaataatttcacatttcctg 25237727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 2521835 - 2521875
Alignment:
Q  314 aaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    |||| ||||||| ||| ||||||||||||||||||||||||    
T  2521835 aaaacgttacttccttcctgcgaataatttcacatttcctg 2521875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 392
Target Start/End: Original strand, 41218285 - 41218370
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 392  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| |||||||||  | |||| ||||| |||||||||||||    
T  41218285 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataattttacatttcctgcggatcctaaaatccta 41218370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 7501147 - 7501089
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  7501147 ttatcgcaaaacgttacttacttcctgcgaataatttcacatttcctgcagataatttc 7501089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 43700128 - 43700181
Alignment:
Q  312 gcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||||| |||||||  ||||||||||||||||||||||||||| ||||||||||    
T  43700128 gcaaaacgttacttcttttctgcgaataatttcacatttcctgcagataatttc 43700181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 53988022 - 53987975
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  53988022 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcctg 53987975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 365
Target Start/End: Original strand, 33178983 - 33179080
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| ||||||| ||||||||||||| || ||       |||| |||||| |||||||  || |||||||||||||||||||| ||| ||||||||||    
T  33178983 tggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttcattcctgcgaataatttcacattttctgcagataatttc 33179080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 26370972 - 26371018
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  26370972 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 26371018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 37516812 - 37516766
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  37516812 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 37516766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 394
Target Start/End: Complemental strand, 17148976 - 17148895
Alignment:
Q  313 caaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 394  Q
    ||||| ||||||| ||| |||||||||||||||||||||||| |||||||| | | |||| ||||| |||||||||||||||    
T  17148976 caaaacgttacttccttcctgcgaataatttcacatttcctgcagataattccacatttcctgcggatcctaaaatcctatg 17148895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 29257552 - 29257498
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  29257552 ttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataa 29257498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 394
Target Start/End: Original strand, 45444383 - 45444466
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 394  Q
    |||||||||||  |||||| ||| ||||||||||||||||||||||||||||||  |    ||||||||| | |||||||||||||||    
T  45444383 ttattgcaaaacattacttccttcctgcgaataatttcacatttcctgtagatatat----ctttcttgcagatcctaaaatcctatg 45444466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 378
Target Start/End: Original strand, 303982 - 304092
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctc 367  Q
    |||| ||| ||||||||||||||||| || ||       |||| |||||| |||||||  | ||||||||||||||||||||||||| |||||||||| |    
T  303982 tggcggagccagaaattttatagagtttgggcaaaaaaattatcgcaaaacgttacttcttatctgcgaataatttcacatttcctgcagataatttcac 304081  T
Q  368 ctttcttgcgg 378  Q
     |||| |||||    
T  304082 atttcctgcgg 304092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 17249555 - 17249469
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    |||| ||||||| ||||||||||||| || ||       |||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  17249555 tggcggagtcaggaattttatagagtctgggcaaaatatttatagcaaaacgttactttcttcctgcgaataatttcacatttcctg 17249469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 18299079 - 18299130
Alignment:
Q  314 aaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  18299079 aaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttc 18299130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 22572651 - 22572697
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| |||||| ||||||||||| |||||||||||||||||||||||    
T  22572651 ttatcgcaaaacgttactttcttcctgcgaataatttcacatttcct 22572697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 41010698 - 41010640
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||| ||||||    
T  41010698 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagaaaatttc 41010640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 41114799 - 41114857
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| |||  ||||||||||||||||||||||| ||||||||||    
T  41114799 ttatcgcaaaacgttacttccttcatgcgaataatttcacatttcctgcagataatttc 41114857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 2476031 - 2475945
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    |||||||||||| ||||||||||||  || ||       |||| |||||| ||||||| ||| ||||||||||||||||||||||||    
T  2476031 tggcagagtcaggaattttatagagcctgggcaaaaaaattatcgcaaaacgttacttccttcctgcgaataatttcacatttcctg 2475945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 6799821 - 6799873
Alignment:
Q  313 caaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    ||||| |||| || ||| |||||||||||||||||||||||| ||||||||||    
T  6799821 caaaacgttagttccttcctgcgaataatttcacatttcctgcagataatttc 6799873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 25563107 - 25563050
Alignment:
Q  337 ataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 394  Q
    ||||||||||||||||||  ||||||||| | |||| || || |||||||||||||||    
T  25563107 ataatttcacatttcctggggataatttcacatttcctgtggatcctaaaatcctatg 25563050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 13203992 - 13203895
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| ||| ||| |||||||||||| ||||||       |||| |||||| ||||||| ||| | |||||||||||||||||| | | ||||||||||    
T  13203992 tggcggagccaggaattttatagagcatgagcaaaaaatttatcgcaaaatgttacttccttccagcgaataatttcacattttccgcagataatttc 13203895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 364
Target Start/End: Complemental strand, 15122268 - 15122172
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataattt 364  Q
    |||| ||||||| ||||||||||||| || ||       |||| |||||| |||||||||||||||||||||||||||||||| ||| |||||||||    
T  15122268 tggcggagtcaggaattttatagagtttgggcaaaaaatttatcgcaaaacgttactttctttctgcgaataatttcacattttctgcagataattt 15122172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 365
Target Start/End: Complemental strand, 9696271 - 9696183
Alignment:
Q  277 cagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    ||||||||||||||||| || ||       |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  9696271 cagaaattttatagagtctgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttc 9696183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 365
Target Start/End: Original strand, 14938818 - 14938910
Alignment:
Q  273 gagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    ||||||||||||||||||||  || ||       |||| |||||| ||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  14938818 gagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttactttcttcctgggaataatttcacatttcctgcagataatttc 14938910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 2960897 - 2960800
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| ||| ||||||||||||||||  |||||       ||||||||||| ||||||| |||  |||||||||||||||||||||||  |||||||||    
T  2960897 tggcggagccagaaattttatagagcctgagcgaaaaaattattgcaaaatgttacttccttcttgcgaataatttcacatttcctgcggataatttc 2960800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 392
Target Start/End: Complemental strand, 34188959 - 34188899
Alignment:
Q  332 tgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 392  Q
    |||||||||||||||||||||||  ||||||||| | |||| ||||| |||||||||||||    
T  34188959 tgcgaataatttcacatttcctgcggataatttcacatttcctgcggatcctaaaatccta 34188899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 365
Target Start/End: Original strand, 2836071 - 2836155
Alignment:
Q  281 aattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    ||||||||||||| |||||       ||||| ||| | ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  2836071 aattttatagagtctgagcaaaaaatttattacaagacgttacttccttcctgcgaataatttcacatttcctgcagataatttc 2836155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 2941408 - 2941350
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||||||    
T  2941408 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataatttc 2941350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 23663689 - 23663747
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| |||||||  || |||||||||||||||||||||||| ||||||||||    
T  23663689 ttatcgcaaaacgttacttcattcctgcgaataatttcacatttcctgcagataatttc 23663747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 34248943 - 34249001
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| ||||| |||||||||||||||||| ||||||||||    
T  34248943 ttatcgcaaaacgttacttccttcctgcggataatttcacatttcctgcagataatttc 34249001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 353
Target Start/End: Original strand, 1780934 - 1781019
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||||||| ||| ||||||||||||| || ||       |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  1780934 tggcagagccaggaattttatagagtctgggcataaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 1781019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 10397739 - 10397797
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||   ||||||||||    
T  10397739 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttccaacagataatttc 10397797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 28614334 - 28614392
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||| |||  |||||||||    
T  28614334 ttatcgcaaaatgttacttccttcctgcgaataatttcacattttctgctgataatttc 28614392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 15675498 - 15675440
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15675498 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtagataatttc 15675440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 767483 - 767398
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 392  Q
    ||||||||||| ||||||||||| |||||||||||||| ||||| |||  ||||||||| | |||| ||| | |||||||||||||    
T  767483 ttattgcaaaacgttactttcttcctgcgaataatttctcattttctgcggataatttcacatttcctgcagatcctaaaatccta 767398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 392
Target Start/End: Original strand, 13942683 - 13942767
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 392  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||||| ||||| ||| | |||| ||||| |||||||||||||    
T  13942683 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgtggataa-ttcacatttcctgcggatcctaaaatccta 13942767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 15504134 - 15504063
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 378  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| |||||||||| | |||| |||||    
T  15504134 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcagataatttcacatttcctgcgg 15504063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 365
Target Start/End: Original strand, 14832696 - 14832799
Alignment:
Q  262 tagcattggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    ||||| |||| ||| ||||||||||||||||| || ||       |||| ||||||  |||||| ||| |||||||||||||||||||||||| ||||||    
T  14832696 tagcagtggcggagccagaaattttatagagtctgggcaaaaaatttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataa 14832795  T
Q  362 tttc 365  Q
    ||||    
T  14832796 tttc 14832799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 35469088 - 35469030
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  35469088 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctgcagataatttc 35469030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 378
Target Start/End: Complemental strand, 6900991 - 6900881
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctc 367  Q
    |||| ||| ||||||||| ||||||||||||        |||| |||||| ||||||| |||  |||||||||||||||||||||||  ||||||||| |    
T  6900991 tggcggagacagaaatttaatagagtatgagtaaaaaatttatcgcaaaatgttacttccttcatgcgaataatttcacatttcctgcggataatttcac 6900892  T
Q  368 ctttcttgcgg 378  Q
     ||||||||||    
T  6900891 atttcttgcgg 6900881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 36234485 - 36234566
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaat 388  Q
    |||| |||||| ||||||| |||  |||||||||||||||||||| || |||||||||| | |||| ||||| |||||||||    
T  36234485 ttatcgcaaaatgttacttccttcttgcgaataatttcacatttcttgcagataatttcacatttcctgcggatcctaaaat 36234566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 7162014 - 7162085
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 378  Q
    |||| |||||| ||||||| ||| |||| |||||||||||||||||||| ||||||||| | |||| |||||    
T  7162014 ttatcgcaaaatgttacttccttcctgcaaataatttcacatttcctgtggataatttcacatttcctgcgg 7162085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 378
Target Start/End: Original strand, 32953598 - 32953669
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgg 378  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| |||||||||| | |||| |||||    
T  32953598 ttatcgcaaaatgttacttccttcctacgaataatttcacatttcctgcagataatttcacatttcctgcgg 32953669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 37552099 - 37552052
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  37552099 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcctg 37552052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 37654929 - 37654882
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  37654929 ttattgcaaaatgttacttccttcctgcgaataatttcacatttcctg 37654882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 1672417 - 1672475
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  1672417 ttatcgcaaaatgttacttccttcctgcgaataatttcacattttctgcagataatttc 1672475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 378
Target Start/End: Complemental strand, 16568015 - 16567905
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctc 367  Q
    |||| ||||||||||||||||||||  || ||       |||| |||||| ||||||| ||| ||| ||||||||||||||||||||  ||||||||| |    
T  16568015 tggcggagtcagaaattttatagagcttgggcaaaaaaattatcgcaaaatgttacttccttcctgggaataatttcacatttcctgcggataatttcac 16567916  T
Q  368 ctttcttgcgg 378  Q
     |||| |||||    
T  16567915 atttcctgcgg 16567905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 394
Target Start/End: Original strand, 12267313 - 12267399
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcctatg 394  Q
    |||| |||||| ||||||| ||| ||| |||||||||||||||| |||  ||||| ||| | |||| ||||| |||||||||||||||    
T  12267313 ttatcgcaaaacgttacttccttcctgtgaataatttcacattttctgcggataa-ttcacatttcctgcggatcctaaaatcctatg 12267399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 2476550 - 2476496
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  2476550 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 2476496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 30249150 - 30249092
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||| ||||||| |||| ||||||||||||||| ||| ||||||||||    
T  30249150 ttatcgcaaaacgttgctttcttcctgcaaataatttcacattttctgcagataatttc 30249092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 33007071 - 33007025
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  33007071 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 33007025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 34444151 - 34444097
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  34444151 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 34444097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 34846531 - 34846485
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  34846531 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 34846485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 353
Target Start/End: Complemental strand, 9527281 - 9527196
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||||||| |||||||||||||||||||| ||       |||| |||||| |||||| |||| |||||||||||||||||||||||    
T  9527281 tggcagagccagaaattttatagagtatgggcaaaaaatttatcgcaaaacgttactgtcttcctgcgaataatttcacatttcct 9527196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 14727515 - 14727457
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  14727515 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcctgcagataatttc 14727457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 378
Target Start/End: Complemental strand, 4774196 - 4774086
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctc 367  Q
    |||| ||| ||||||||||||||||| || ||       |||| |||||| ||||||||||| ||||||||||||||||||||| ||  ||||||||| |    
T  4774196 tggcggagccagaaattttatagagtctgggcaaaaaaattatcgcaaaatgttactttcttcctgcgaataatttcacatttcttgcggataatttcac 4774097  T
Q  368 ctttcttgcgg 378  Q
     |||| |||||    
T  4774096 atttcctgcgg 4774086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 27460864 - 27460806
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||| ||||||  |||||| ||| |||||||||||||||||||||||| ||||||||||    
T  27460864 ttatcgcaaaacattacttccttcctgcgaataatttcacatttcctgcagataatttc 27460806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 365
Target Start/End: Original strand, 4641972 - 4642025
Alignment:
Q  312 gcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||  |||||||||    
T  4641972 gcaaaacgttacttccttcctgcgaataatttcacatttcctgcggataatttc 4642025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 392
Target Start/End: Complemental strand, 49898573 - 49898492
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatccta 392  Q
    |||| |||||| ||||| | ||| ||||||||||||||||||||||||| ||||  |    ||||||||||| |||||||||||||    
T  49898573 ttatcgcaaaatgttacgtccttcctgcgaataatttcacatttcctgtggatatat----ctttcttgcggatcctaaaatccta 49898492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 25007649 - 25007595
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  25007649 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 25007595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 365
Target Start/End: Original strand, 27583967 - 27584001
Alignment:
Q  331 ctgcgaataatttcacatttcctgtagataatttc 365  Q
    |||||||||||||||||||||||| ||||||||||    
T  27583967 ctgcgaataatttcacatttcctgcagataatttc 27584001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 31844571 - 31844617
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  31844571 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 31844617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 33468901 - 33468947
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  33468901 ttatcgcaaaacgttacttccttcctgcgaataatttcacatttcct 33468947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 37153920 - 37153974
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  37153920 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 37153974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 44305597 - 44305543
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  44305597 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 44305543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 390
Target Start/End: Complemental strand, 4843505 - 4843422
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataatttctcctttcttgcgggtcctaaaatcc 390  Q
    |||| |||||| |||||||  || ||||||||||||||||||||||||  ||||||||| | |||| ||||| |||||||||||    
T  4843505 ttatcgcaaaacgttacttctttcctgcgaataatttcacatttcctgcggataatttcacatttcctgcggatcctaaaatcc 4843422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 354
Target Start/End: Complemental strand, 3012546 - 3012460
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    |||| ||| ||||||||||||||||| || ||       ||||||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  3012546 tggcggagccagaaattttatagagtctgggcaaaaaaattattgcaaaacgttacttccttcctgtgaataatttcacatttcctg 3012460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 21932633 - 21932729
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataattt 364  Q
    |||| ||||||| ||||||||||||| || ||       |||| |||||| |||||||  || ||||||||||||||| |||||||| |||||||||    
T  21932633 tggcggagtcaggaattttatagagtctgggcaaaaaatttatcgcaaaatgttacttctttcctgcgaataatttcatatttcctgcagataattt 21932729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 354
Target Start/End: Original strand, 22206616 - 22206663
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||||    
T  22206616 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctg 22206663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 22228123 - 22228076
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    |||| |||||| ||||||| ||| ||||||||||||||||||||||||    
T  22228123 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcctg 22228076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 19377573 - 19377511
Alignment:
Q  331 ctgcgaataatttcacattt-cctgtagataatttctcctttcttgcgggtcctaaaatccta 392  Q
    |||||||||||||||||||| ||||  ||||||||| | |||| ||||| |||||||||||||    
T  19377573 ctgcgaataatttcacattttcctgcggataatttcacatttcctgcggatcctaaaatccta 19377511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 26722850 - 26722933
Alignment:
Q  268 tggcagagtcagaaattttatagagtatgagcnnnnnnnttattgcaaaaggttactttctttctgcgaataatttcacatttc 351  Q
    |||||||||||| ||||||||||||  || ||       |||| |||||| ||||||| ||| |||||||||||||||||||||    
T  26722850 tggcagagtcaggaattttatagagcttgggcaaaaaatttatcgcaaaacgttacttccttcctgcgaataatttcacatttc 26722933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 28693933 - 28693979
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| ||||||  |||||| |||||||||||||||||||||||||||    
T  28693933 ttatcgcaaaactttacttcctttctgcgaataatttcacatttcct 28693979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 21688312 - 21688276
Alignment:
Q  329 ttctgcgaataatttcacatttcctgtagataatttc 365  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  21688312 ttctgtgaataatttcacatttcctgcagataatttc 21688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 25688148 - 25688188
Alignment:
Q  314 aaaaggttactttctttctgcgaataatttcacatttcctg 354  Q
    |||| ||||||| ||||||| ||||||||||||||||||||    
T  25688148 aaaatgttacttcctttctgtgaataatttcacatttcctg 25688188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 1881 - 1827
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    |||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  1881 ttatcgcaaaacgttacttcctttctgcgaataatttcacatttcctgcagataa 1827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 4263 - 4217
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcct 353  Q
    |||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  4263 ttatcgcaaaatgttacttccttcctgcgaataatttcacatttcct 4217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 11709 - 11655
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgtagataa 361  Q
    |||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||||    
T  11709 ttatcgcaaaacgttacttccttcctacgaataatttcacatttcctgcagataa 11655  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 109234 - 109282
Alignment:
Q  307 ttattgcaaaaggttactttctttctgcgaataatttcacatttcctgt 355  Q
    |||||||||||  |||||| ||| |||||||||||||||| ||||||||    
T  109234 ttattgcaaaacattacttccttcctgcgaataatttcacgtttcctgt 109282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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