View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19538_high_6 (Length: 357)

Name: NF19538_high_6
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19538_high_6
NF19538_high_6
[»] chr2 (9 HSPs)
chr2 (10-339)||(2486440-2486769)
chr2 (123-268)||(2470990-2471135)
chr2 (144-241)||(2478853-2478950)
chr2 (144-339)||(2483262-2483454)
chr2 (126-278)||(2474227-2474379)
chr2 (203-269)||(3063339-3063405)
chr2 (203-269)||(2462592-2462658)
chr2 (203-269)||(2466640-2466706)
chr2 (126-262)||(2469972-2470108)
[»] chr4 (1 HSPs)
chr4 (203-269)||(18015915-18015981)


Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 2486769 - 2486440
Alignment:
Q  10 attatactacataagatgatctaaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccag 109  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2486769 attatactacataagatgaactcaaatgaacattattttgaaattttaaaacattaaaaactatataattatcaggaactcatttcatacattttcccag 2486670  T
Q  110 atattattaattcttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2486669 atattattaattcttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgagccaccattatca 2486570  T
Q  210 catttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgat 309  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2486569 catttcactttgccacatccaacacgtagtgatttttcccaaacaacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgat 2486470  T
Q  310 taaagtatggttcttcatccacccacaact 339  Q
    ||||||||||||||||||||||||||||||    
T  2486469 taaagtatggttcttcatccacccacaact 2486440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 123 - 268
Target Start/End: Complemental strand, 2471135 - 2470990
Alignment:
Q  123 ttgatatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgc 222  Q
    ||||| ||| |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||  |||||||| |||||||||||| |||||||||    
T  2471135 ttgatctgagtcacttagtacggtaattgaccagcaatgttaccaggtgggtcataattgcaagtaatgaatgtgcctccattatcacatctcactttgc 2471036  T
Q  223 cacatccaacacgtagtgatttttcccaaaccacctgagtataatg 268  Q
    |||||||||||||| ||||||||||||| | |||||| ||||||||    
T  2471035 cacatccaacacgttgtgatttttcccatatcacctgggtataatg 2470990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 2478950 - 2478853
Alignment:
Q  144 ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccacatccaacacgtagtga 241  Q
    ||||||||||||| ||||||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||    
T  2478950 ggtaattggccaggaatgttacctgggggataataattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgtagtga 2478853  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 339
Target Start/End: Complemental strand, 2483454 - 2483262
Alignment:
Q  144 ggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccacatccaacacgtagtgatt 243  Q
    ||||||||||||| ||| ||||| ||||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||      
T  2483454 ggtaattggccaggaatattacctgggggataataattacaagtaacaaatgttccaccattattacatttcactttgccacatccaagacgtagtgaac 2483355  T
Q  244 tttcccaaaccacctgagtataatggtggcattcatgaccatcaatacatgagttagcatagtgattaaagtatggttcttcatccacccacaact 339  Q
     |  |||||| ||||| ||| |||| || |||||   |||||||| ||||  ||||  ||||| || ||||| ||||| ||||||| |||||||||    
T  2483354 ctgaccaaacaacctgggtaaaatgatgacattc---accatcaaaacatttgttaagatagttatcaaagtgtggtttttcatccgcccacaact 2483262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 126 - 278
Target Start/End: Complemental strand, 2474379 - 2474227
Alignment:
Q  126 atatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccac 225  Q
    |||||||||| ||||||||||  || ||||  |  ||| |||||||| || |||||||||||||  ||||| || ||||||||||||||||||||| |||    
T  2474379 atatgaatcaattagtatggtctttcgccaatatagttgccaggggggtcgtaattgcaagtaatgaatgttcctccattatcacatttcactttggcac 2474280  T
Q  226 atccaacacgtagtgatttttcccaaaccacctgagtataatggtggcattca 278  Q
    |||||| ||||  ||  |||  |||||||||||||||||||||| ||||||||    
T  2474279 atccaatacgttttgtgtttctccaaaccacctgagtataatggaggcattca 2474227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 269
Target Start/End: Original strand, 3063339 - 3063405
Alignment:
Q  203 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg 269  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||| |||||||||||||||    
T  3063339 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataatgg 3063405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 2462658 - 2462592
Alignment:
Q  203 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg 269  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||| ||||| |||||||||    
T  2462658 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataatgg 2462592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 2466706 - 2466640
Alignment:
Q  203 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg 269  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||| ||||| |||||||||    
T  2466706 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgggtataatgg 2466640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 2470108 - 2469972
Alignment:
Q  126 atatgaatcacttagtatggtaattggccagcaatgttaccagggggatcataattgcaagtaacaaatgtgccaccattatcacatttcactttgccac 225  Q
    |||||||||||||||||||||  || ||||  |  ||| || || || || |||||||||||||  ||||| || || |||| ||||||||||||| |||    
T  2470108 atatgaatcacttagtatggtctttcgccaatatagttgcctggtgggtcgtaattgcaagtaatgaatgttcctccgttattacatttcactttggcac 2470009  T
Q  226 atccaacacgtagtgatttttcccaaaccacctgagt 262  Q
    ||||||  ||| |||  |||  |||||||||||||||    
T  2470008 atccaatccgttgtgtgtttctccaaaccacctgagt 2469972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 18015981 - 18015915
Alignment:
Q  203 attatcacatttcactttgccacatccaacacgtagtgatttttcccaaaccacctgagtataatgg 269  Q
    |||||||||| |||||||| |||||||||||||| |||| |||  |||||| |||||||||||||||    
T  18015981 attatcacatctcactttggcacatccaacacgttgtgagtttctccaaacaacctgagtataatgg 18015915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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