View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19538_high_7 (Length: 355)
Name: NF19538_high_7
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19538_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 8927091 - 8927427
Alignment:
| Q |
1 |
accttggtgaccaacttgaggtaacaatttaatgtatacatgttcataaggttttaaatcacattaaccatcgcgtcgcaatcctttatattaaaaagaa |
100 |
Q |
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| T |
8927091 |
accttggtgaccaacttgaggtaacaatttaatgtatacatgttcataagattttaaatcacattaaccatcgcgtcgcaatcctttatattaaaaagaa |
8927190 |
T |
|
| Q |
101 |
tcatggtcaagtgcagatacacttgagacgctacttcaatgtgctgagttcgaattccctaaagaccattgtaaaatggtcgtaccactttattaataaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8927191 |
tcatggtcaagtgcagatacacttgagacgctacttcaatgtgctgagttcgaattccctaaagaccattgtaaaatggtcgtaccactttattaataaa |
8927290 |
T |
|
| Q |
201 |
aattcatcatttttggtcgaatcatggatcagataccgagnnnnnnnnnnnnnnnntgttgaaaggaagctgatgcattttaaatctcacctttttactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8927291 |
aattcatcatttttggtcgaatcatggatcagataccgagttttttaaaaaaaaaatgttgaaaggaagctgatgcattttaaatcgcacctttttactt |
8927390 |
T |
|
| Q |
301 |
aaaacatcgcatgtgcacatagccacatactctacta |
337 |
Q |
| |
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||||||||||||| |||||||||||| |||||||||| |
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| T |
8927391 |
aaaacatcgcatgggcacatagccacttactctacta |
8927427 |
T |
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