View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19538_high_8 (Length: 304)
Name: NF19538_high_8
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19538_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 11 - 180
Target Start/End: Original strand, 44001516 - 44001682
Alignment:
| Q |
11 |
cataggcctaatcccaagttcttgaaacagaatgttaactgcatagcatagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaac |
110 |
Q |
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| T |
44001516 |
cataggcctaatcccaagttcttgaaacagaatgttaactgcatagcatagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaac |
44001615 |
T |
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| Q |
111 |
ctcatcactttgtccatcttgatgatgatgatactgttaaaagttctagttcttgtagttgttcttctag |
180 |
Q |
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| T |
44001616 |
ctcatcactttgtccatct---tgatgatgatactgttaaaagttctagttcttgtagttgttcttctag |
44001682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 44001730 - 44001777
Alignment:
| Q |
227 |
gagaaagtctaagtttgagataatatttgtttagatttattaccttaa |
274 |
Q |
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| T |
44001730 |
gagaaagtctaagtttgagataatatttgtttagatttattaccttaa |
44001777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 39866038 - 39865935
Alignment:
| Q |
24 |
ccaagttcttgaaacagaatgttaactgcatagcatagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgt |
123 |
Q |
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|||| ||||||||||| |||||| |||||||||||||||||||| || ||||| ||||| | ||||||||| ||||| | |||||||||||||| || | |
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| T |
39866038 |
ccaatttcttgaaacaaaatgttcactgcatagcatagacaacaagagctcttggtgaataccaccacacccttttctgtagccaacctcatcaccttct |
39865939 |
T |
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| Q |
124 |
ccat |
127 |
Q |
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|||| |
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| T |
39865938 |
ccat |
39865935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 39861584 - 39861478
Alignment:
| Q |
24 |
ccaagttcttgaaacagaatgttaactgcatagcatagacaacatgaactctttgtgaaaatcaccacacctttttcagatgccaacctcatcactttgt |
123 |
Q |
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|||| ||||||||||| |||||| ||||||||||| | |||||| || ||||| ||||||||||| ||||| ||||| | |||||||||||||| || | |
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| T |
39861584 |
ccaatttcttgaaacaaaatgttcactgcatagcacaaacaacaagagctcttggtgaaaatcacaacacccttttctgtagccaacctcatcaccttct |
39861485 |
T |
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| Q |
124 |
ccatctt |
130 |
Q |
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||||||| |
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| T |
39861484 |
ccatctt |
39861478 |
T |
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