View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19538_low_11 (Length: 296)
Name: NF19538_low_11
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19538_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 194330 - 194594
Alignment:
| Q |
18 |
tttctgatgttgctcaatccctttccctcccttctgctttgctttggattcaatcatgtgcttccttctcttcttactatcattactatcataaattagt |
117 |
Q |
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| T |
194330 |
tttctgatgttgctcaatccctttccctcccttctgctttgctttggattcaatcatgtgcttccttctctacttactatcattactatcataaattagt |
194429 |
T |
|
| Q |
118 |
ttctttcccttctcaatcccatccccatattcatgttcagctgccatgtatgcctctgttgaattatgatcaagtccctagcttcttgtatcccaccact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
194430 |
ttctttcccttctcaatcccatccccatattcatgttcagctgccatgtatgcctctgttgaattatgatcaagtccctagcttcttgtatcccaccact |
194529 |
T |
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| Q |
218 |
ccctatccatttcttagaagggcgatcctgggacagttccaaaacttgcataaatctttctgtat |
282 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
194530 |
ccctatccatttcttagaagggcgatcttgggacagttccaaaacttgcataaacctttctgtat |
194594 |
T |
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