View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19538_low_17 (Length: 236)
Name: NF19538_low_17
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19538_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29258759 - 29258989
Alignment:
| Q |
1 |
aatccaaacttctgccgaacagttaagaaataacagccggaa-------ttacaactattgtccttaaacattagagacactatgctccaataatcttct |
93 |
Q |
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| T |
29258759 |
aatccaaacttctgctgaacagttaagaaataacagccagaaatcagaattaccattattgtcctttaacatcagagacactatgctccaataatct-ct |
29258857 |
T |
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| Q |
94 |
atcattttctgattcaaattacacaaatcaattgggacactagtgaagcctaagtctaa----gaaggtccgtcctaatcgataaaactagtactcttgc |
189 |
Q |
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| T |
29258858 |
atcattttctgattcaaattacacaaatcaattgggacactagtgaagcctaagtctaattaagaaggtctgtcctaatcgataaaactagtactcttgc |
29258957 |
T |
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| Q |
190 |
aaacatgttgatcccttaaggaaacttgttgg |
221 |
Q |
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| T |
29258958 |
aaacatgttgatcccttaaggaaacttgttgg |
29258989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 2376734 - 2376876
Alignment:
| Q |
77 |
tgctccaataatcttctatcattttctgattcaaattacacaaatcaattgggacactagtgaagcctaagtctaagaaggtccgtcctaa--tcgataa |
174 |
Q |
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| T |
2376734 |
tgctctaataatcttctttcatttgctgatttgaattacacaaatcagttgggac--tattgaagcctaagtctgagatggtgtgtccgaaaatcgataa |
2376831 |
T |
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| Q |
175 |
aactagtactcttgcaaacatgttgatcccttaaggaaacttgtt |
219 |
Q |
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| T |
2376832 |
cactagtactcttgcaaacatgttgatcactcaaggtaacttgtt |
2376876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 2376663 - 2376703
Alignment:
| Q |
18 |
aacagttaagaaataacagccggaattacaactattgtcct |
58 |
Q |
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| T |
2376663 |
aacagttaagaaataacagctggaattacaacaatagtcct |
2376703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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