View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19538_low_18 (Length: 233)
Name: NF19538_low_18
Description: NF19538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19538_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 34216295 - 34216506
Alignment:
| Q |
10 |
aagaatatttcaccaaagactcttgtttggatagcaaaccgagatgttccactaggaaactcatcaggagttttgaatctcacagataaaggaactcttg |
109 |
Q |
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| T |
34216295 |
aagaatatttcaccaaagactcttgtttggatagcaaaccgagatgttccactaggaaactcatcaggagttttgaatctcacagataaaggaactcttg |
34216394 |
T |
|
| Q |
110 |
ttattgttgattccaaagaggttacgatatggtcatctaatacatcaacgacggcatcaaaaccaagtttgcagctcttggaaagtggaaatcttattgt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34216395 |
ttattgttgattccaaagaggttacgatatggtcatctaatacatcaacgacgacatcaaaaccaagtttgcagctcttggaaagtggaaatcttattgt |
34216494 |
T |
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| Q |
210 |
aaaagatgaaat |
221 |
Q |
| |
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|||||||||||| |
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| T |
34216495 |
aaaagatgaaat |
34216506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 34195275 - 34195070
Alignment:
| Q |
16 |
atttcaccaaagactcttgtttggatagcaaaccgagatgttccactaggaaactcatcaggagttttgaatctcacagataaaggaactcttgttattg |
115 |
Q |
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||||||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34195275 |
atttcaccaaaaactcctgtgtggatagcaaatagagatgttccattaggaaactcatcaggagttttgaatcttacagataaaggaactcttgttattg |
34195176 |
T |
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| Q |
116 |
ttgattccaaagaggttacgatatggtcatctaatacatcaacgacggcatcaaaaccaagtttgcagctcttggaaagtggaaatcttattgtaaaaga |
215 |
Q |
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| T |
34195175 |
tcgattccaaagaggttatgatatggtcatctaatacatcaacaacagcagtaaaaccaagtttgcagctcttggaaactggaaatctagttgtaaaaga |
34195076 |
T |
|
| Q |
216 |
tgaaat |
221 |
Q |
| |
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|||||| |
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| T |
34195075 |
tgaaat |
34195070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 34204874 - 34205080
Alignment:
| Q |
14 |
atatttcaccaaagactcttgtttggatagcaaaccgagatgttccactaggaaactcatcaggagttttgaatctcacagataaaggaactcttgttat |
113 |
Q |
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|||||||||||| ||| |||| ||||||||||| ||||| |||| |||||||||||| ||||||||| ||| | || |||||||||| |||||||| |
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| T |
34204874 |
atatttcaccaataactgttgtgtggatagcaaatagagattctccattaggaaactcattaggagtttttaatgtaactgataaaggaaaccttgttat |
34204973 |
T |
|
| Q |
114 |
tgttgattccaaagaggttacgatatggtcatctaatacatcaacgacggcatcaaaaccaagtttgcagctcttggaaagtggaaatcttattgtaaaa |
213 |
Q |
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|||||||||||||| || || ||||||||| |||||||| ||||| || | ||||||||| | ||||| ||||||| ||||| || || |||| ||| |
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| T |
34204974 |
tgttgattccaaaggggctatgatatggtcctctaatacctcaacaacagatgcaaaaccaactgtgcaggtcttggatagtggtaacctagttgtgaaa |
34205073 |
T |
|
| Q |
214 |
gatgaaa |
220 |
Q |
| |
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||||||| |
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| T |
34205074 |
gatgaaa |
34205080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 25265677 - 25265566
Alignment:
| Q |
16 |
atttcaccaaagactcttgtttggatagcaaaccgagatgttccactaggaaactcatcaggagttttgaatctcacagataaaggaactcttgttattg |
115 |
Q |
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||||||||||| |||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
25265677 |
atttcaccaaaaactcttgtgtggatagcaaatagagacattccattaggaaactcatcaggagttttgaatctcacaaataaatgaactcttgttattg |
25265578 |
T |
|
| Q |
116 |
ttgattccaaag |
127 |
Q |
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|||||||||||| |
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| T |
25265577 |
ttgattccaaag |
25265566 |
T |
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